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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-01-02 22:13:24 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-01-02 22:13:24 +0000 |
| commit | ab40cbbee63724ac31c8d184d0deadbf9032239a (patch) | |
| tree | cd6fd6b46f88a09e8b1efe131745d8e73d01a7e2 /sci-biology/bedtools | |
| parent | Moved to EAPI=4, handle static-libs correctly (diff) | |
| download | historical-ab40cbbee63724ac31c8d184d0deadbf9032239a.tar.gz historical-ab40cbbee63724ac31c8d184d0deadbf9032239a.tar.bz2 historical-ab40cbbee63724ac31c8d184d0deadbf9032239a.zip | |
Version bump
Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/bedtools')
| -rw-r--r-- | sci-biology/bedtools/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/bedtools/Manifest | 10 | ||||
| -rw-r--r-- | sci-biology/bedtools/bedtools-2.15.0.ebuild | 33 |
3 files changed, 46 insertions, 6 deletions
diff --git a/sci-biology/bedtools/ChangeLog b/sci-biology/bedtools/ChangeLog index dbf5b6263ac9..a6c655ef86dd 100644 --- a/sci-biology/bedtools/ChangeLog +++ b/sci-biology/bedtools/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/bedtools -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/ChangeLog,v 1.1 2011/10/09 04:01:53 weaver Exp $ +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/ChangeLog,v 1.2 2012/01/02 22:13:24 weaver Exp $ + +*bedtools-2.15.0 (02 Jan 2012) + + 02 Jan 2012; Andrey Kislyuk <weaver@gentoo.org> +bedtools-2.15.0.ebuild: + Version bump *bedtools-2.13.3 (09 Oct 2011) diff --git a/sci-biology/bedtools/Manifest b/sci-biology/bedtools/Manifest index 4d35840a8783..a399494574a9 100644 --- a/sci-biology/bedtools/Manifest +++ b/sci-biology/bedtools/Manifest @@ -2,13 +2,15 @@ Hash: SHA1 DIST BEDTools.v2.13.3.tar.gz 928205 RMD160 2d4da4fc9f15ac9ba16e733349232822b87a09a9 SHA1 bcd52ba59908c1f98d0c84f4d3fb2e1efb0636d0 SHA256 9c3ec91dfe276005016e002badabf9fa2e12218ed5dbdb30679b5120ed330bbc +DIST BEDTools.v2.15.0.tar.gz 962861 RMD160 2911734ff86ed72766a97c8a8642f5a87333ba3f SHA1 ca0aa595809f56c3fb5752de32d7ceb87ea844de SHA256 2e6f20435ad403fdf0c9d4d8f160b7eb2491d5213935178c25d6ab222a45c505 EBUILD bedtools-2.13.3.ebuild 820 RMD160 ee781c0550d4b881bfb4dbdd5154f434076a7379 SHA1 638f696da7369a8f2879edd3d71cb7ba3f0905fc SHA256 b4aa425340ee26d55915ae00b975b0462156a7d8b9446c29418ed1b84adfbc01 -MISC ChangeLog 475 RMD160 7222f0882455a6e09651619a40d60438170a8796 SHA1 7164e706ce82e0c9e7efc61b20e23464b6ba0541 SHA256 0d780fa3070ab58cf2c2244ad90298aa79b61efed7abefe1610e594ad0c49fc2 +EBUILD bedtools-2.15.0.ebuild 804 RMD160 f663ae7abe672755467186f78567ba7f31f9ce42 SHA1 938ed6a459d5bd0ecba8c58a21448c763d262fd1 SHA256 a4b4184816e7e7e4561f9787f6f073138ac7857a55135349902733f7cd62f464 +MISC ChangeLog 598 RMD160 6ebeeb8770d9079f9037b0c40890fc312a3b3d7b SHA1 8fc3346f4845a79674a8d7b539055bb7ed7d00f6 SHA256 c90bbbdf10dba85e21b0cbe96809bd9b17fc95899123a3583f7b29f3d12e56d1 MISC metadata.xml 471 RMD160 b3da36bc88c543e8e7589238dc39ea30a0cba58e SHA1 2b966e33142eb4491a33fb385cb70e230884398c SHA256 b845453d89e580a9ef80ba745d64cba010dbba50021aaf6f44bcbf5f28512fa0 -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (GNU/Linux) -iEYEARECAAYFAk6RHLcACgkQ8xSwyhbn2Oa26gCeMC0dKoeW4Sk3FierqSntNkcl -7QwAni5cd6xyn2mJOFId6jCFKILifVJF -=ymwO +iEYEARECAAYFAk8CLAkACgkQ8xSwyhbn2OZzUACgrdtueyVjC2QESsb58CG01F6e +UbgAoIXM4SWrlwLZPBMhlB7WBTz1Pw2w +=9Xq/ -----END PGP SIGNATURE----- diff --git a/sci-biology/bedtools/bedtools-2.15.0.ebuild b/sci-biology/bedtools/bedtools-2.15.0.ebuild new file mode 100644 index 000000000000..69f825cbe108 --- /dev/null +++ b/sci-biology/bedtools/bedtools-2.15.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/bedtools-2.15.0.ebuild,v 1.1 2012/01/02 22:13:24 weaver Exp $ + +EAPI=4 + +inherit flag-o-matic + +DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, and SAM/BAM file formats" +HOMEPAGE="http://code.google.com/p/bedtools/" +SRC_URI="http://bedtools.googlecode.com/files/BEDTools.v${PV}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" + +S="${WORKDIR}/BEDTools-Version-${PV}" + +src_prepare() { + filter-ldflags -Wl,--as-needed + sed -i \ + -e '/export CXXFLAGS/ d' \ + -e '/export CXX/ d' \ + Makefile || die +} + +src_install() { + dobin bin/* + dodoc README* RELEASE_HISTORY + insinto /usr/share/${PN} + doins -r genomes +} |