diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-07-15 15:43:19 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-07-15 15:43:19 +0000 |
| commit | 86c254ef5b284b48870a4b7723f345b8c4cb62d9 (patch) | |
| tree | a5b761b2760412a8051b8356b1bef9b3fcf7d224 /sci-biology/bowtie | |
| parent | Add perl-5.12 as provider (diff) | |
| download | historical-86c254ef5b284b48870a4b7723f345b8c4cb62d9.tar.gz historical-86c254ef5b284b48870a4b7723f345b8c4cb62d9.tar.bz2 historical-86c254ef5b284b48870a4b7723f345b8c4cb62d9.zip | |
Version bump
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/bowtie')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/bowtie/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.12.5.ebuild | 32 |
3 files changed, 41 insertions, 2 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog index a31434552b36..6c3cda99819c 100644 --- a/sci-biology/bowtie/ChangeLog +++ b/sci-biology/bowtie/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/bowtie # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.8 2010/03/23 07:20:14 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.9 2010/07/15 15:43:19 weaver Exp $ + +*bowtie-0.12.5 (15 Jul 2010) + + 15 Jul 2010; Andrey Kislyuk <weaver@gentoo.org> +bowtie-0.12.5.ebuild: + Version bump *bowtie-0.12.3 (23 Mar 2010) diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest index ba802cfe53b1..0b9ab5658e48 100644 --- a/sci-biology/bowtie/Manifest +++ b/sci-biology/bowtie/Manifest @@ -1,6 +1,8 @@ DIST bowtie-0.10.1-src.zip 10258866 RMD160 99628de52fda58ee358f1ac629634210be24cf3e SHA1 f509f442d824a7b2b0650f29d2b3625aea1a1466 SHA256 71a64c08eee4147f670d52a8e9f61d28d9c67fa595ece93d55d9524e15fed809 DIST bowtie-0.12.3-src.zip 10314474 RMD160 a5e9fc5de69c8c4e64e30bcfaf8303b3021e5b8f SHA1 7bf3ca4071638d36ff5139f8ccd976315e98c4b3 SHA256 aac6e02cc95058e19092f6f56e87ed2eac3df11ecce889050c6feea2b2344b84 +DIST bowtie-0.12.5-src.zip 10319902 RMD160 41e02aec08e77ce7944eb5440fdd78efb99d5a97 SHA1 90448c971d30797a63dcbc72246874a163174215 SHA256 244aa3ccbc15c88970196b0fb958c8455504902b5414987bf224c9dd92984cce EBUILD bowtie-0.10.1.ebuild 859 RMD160 08afd397a1e50da00b9209180a8cf94ae7896c33 SHA1 e7e5add9032a345ce2688f4b17417c9693039f13 SHA256 474c8f2ee5303e04d39e8642187daa3531c91327c921f99a3a16b986e4f57842 EBUILD bowtie-0.12.3.ebuild 919 RMD160 57af2e47928f2bd074794b1dc396de86402ada60 SHA1 d5c86bb95744c9671552e4e621244ed2191830b6 SHA256 a7987aec6d4c354928fe1203a269b09c49b1968b8e24cbc5549a9610b40d5f15 -MISC ChangeLog 1345 RMD160 8cc241d41f91f4b760c4b5448e5f40d2865549f3 SHA1 e762dc57ae361279b88e063c822a620080766e74 SHA256 81e541ceacf44bf8274fb8fd067c85173efff2d10c97f92ef3cd7eb03dc42cfa +EBUILD bowtie-0.12.5.ebuild 919 RMD160 edb6f0edd8236c8a0d3d2c166259a82f45184161 SHA1 228a9b5560b585713584649b48e904428b0fb568 SHA256 f7f71e90286d62e79fa7976543d6fbbf36f2d32b9beacab91060fd92cdbeeaa7 +MISC ChangeLog 1464 RMD160 b95a9a6bd6d83c041881e4652e4a181abce83754 SHA1 f24c8a93f993889ddbbc2a512cd660382c7daf5d SHA256 a1610e67accc80c7e559e6e0a4d26b008507056b1292bf3d387cd9c462c5e61c MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/bowtie/bowtie-0.12.5.ebuild b/sci-biology/bowtie/bowtie-0.12.5.ebuild new file mode 100644 index 000000000000..bed44b494d77 --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.12.5.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.5.ebuild,v 1.1 2010/07/15 15:43:19 weaver Exp $ + +EAPI="2" + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) +# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS + +src_prepare() { + sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die +} + +src_install() { + dobin bowtie bowtie-* || die + exeinto /usr/share/${PN}/scripts + doexe scripts/* || die + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} |