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| author |   Justin Lecher <jlec@gentoo.org> | 2015-05-27 16:32:12 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2015-05-27 16:32:12 +0000 |
| commit | 982ce77051dbc683f19e8c80bde15d907f357840 (patch) | |
| tree | 31596e87218c9a9f51774f8119ee90d94e2020b5 /sci-biology/glimmer/glimmer-3.02-r2.ebuild | |
| parent | Drop vulnerable versions for security bug 546722 (diff) | |
| download | historical-982ce77051dbc683f19e8c80bde15d907f357840.tar.gz historical-982ce77051dbc683f19e8c80bde15d907f357840.tar.bz2 historical-982ce77051dbc683f19e8c80bde15d907f357840.zip | |
Drop old
Package-Manager: portage-2.2.20/cvs/Linux x86_64
Manifest-Sign-Key: 0xE9402A79B03529A2!
Diffstat (limited to 'sci-biology/glimmer/glimmer-3.02-r2.ebuild')
| -rw-r--r-- | sci-biology/glimmer/glimmer-3.02-r2.ebuild | 51 |
1 files changed, 0 insertions, 51 deletions
diff --git a/sci-biology/glimmer/glimmer-3.02-r2.ebuild b/sci-biology/glimmer/glimmer-3.02-r2.ebuild deleted file mode 100644 index e0ebb19b6adb..000000000000 --- a/sci-biology/glimmer/glimmer-3.02-r2.ebuild +++ /dev/null @@ -1,51 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmer/glimmer-3.02-r2.ebuild,v 1.3 2010/07/16 17:29:32 hwoarang Exp $ - -EAPI="2" - -inherit eutils - -MY_PV=${PV//./} - -DESCRIPTION="An HMM-based microbial gene finding system from TIGR" -HOMEPAGE="http://www.cbcb.umd.edu/software/glimmer/" -SRC_URI="http://www.cbcb.umd.edu/software/${PN}/${PN}${MY_PV}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -IUSE="" -KEYWORDS="amd64 x86" - -DEPEND="" -RDEPEND="app-shells/tcsh - !app-crypt/pkcrack - !media-libs/libextractor" - -S="${WORKDIR}/${PN}${PV}" - -src_prepare() { - sed -i -e 's|\(set awkpath =\).*|\1 /usr/share/'${PN}'/scripts|' \ - -e 's|\(set glimmerpath =\).*|\1 /usr/bin|' scripts/* || die "failed to rewrite paths" - # Fix Makefile to die on failure - sed -i 's/$(MAKE) $(TGT)/$(MAKE) $(TGT) || exit 1/' src/c_make.gen || die - # GCC 4.3 include fix - sed -i 's/include <string>/include <string.h>/' src/Common/delcher.hh || die - epatch "${FILESDIR}/${P}-glibc210.patch" - epatch "${FILESDIR}/${P}-jobserver-fix.patch" - epatch "${FILESDIR}/${P}-ldflags.patch" -} - -src_compile() { - emake -C src || die -} - -src_install() { - rm bin/test - dobin bin/* || die - - insinto /usr/share/${PN}/scripts - doins scripts/* || die - - dodoc glim302notes.pdf -} |