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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-09-26 02:30:24 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-09-26 02:30:24 +0000 |
| commit | d5fe144273d735f5d3b6f3c732ec684d796fddd8 (patch) | |
| tree | e0decde2db5344dff1bc230c658868e54f1b9e1a /sci-biology/mothur | |
| parent | Address CVE-2010-3081 related changes, thanks Enrico Tagliavini <enrico.tagli... (diff) | |
| download | historical-d5fe144273d735f5d3b6f3c732ec684d796fddd8.tar.gz historical-d5fe144273d735f5d3b6f3c732ec684d796fddd8.tar.bz2 historical-d5fe144273d735f5d3b6f3c732ec684d796fddd8.zip | |
Version bump
Package-Manager: portage-2.2_rc61/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/mothur')
| -rw-r--r-- | sci-biology/mothur/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/mothur/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/mothur/mothur-1.13.0.ebuild | 36 |
3 files changed, 45 insertions, 2 deletions
diff --git a/sci-biology/mothur/ChangeLog b/sci-biology/mothur/ChangeLog index e7eb46ee2ec5..aa5507440a3a 100644 --- a/sci-biology/mothur/ChangeLog +++ b/sci-biology/mothur/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/mothur # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.6 2010/08/27 09:28:47 xarthisius Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.7 2010/09/26 02:30:24 weaver Exp $ + +*mothur-1.13.0 (26 Sep 2010) + + 26 Sep 2010; Andrey Kislyuk <weaver@gentoo.org> +mothur-1.13.0.ebuild: + Version bump *mothur-1.7.2-r1 (27 Aug 2010) diff --git a/sci-biology/mothur/Manifest b/sci-biology/mothur/Manifest index e537ef243995..20493db4b5c3 100644 --- a/sci-biology/mothur/Manifest +++ b/sci-biology/mothur/Manifest @@ -1,6 +1,8 @@ +DIST mothur-1.13.0.zip 871838 RMD160 abe39f6e2185e1e6dcf0e64485da1c806bc58e16 SHA1 59c158477b8715a0e09c6ef45b1ae4e5f5829c1e SHA256 4fe62fcd9b8cc893aecce145ea851581d33f9c835d9dcd6405d9c80acf02ac77 DIST mothur-1.6.0.zip 465292 RMD160 d4aeea76dfeba93d7d3524a54c307f12e87b5b26 SHA1 0e952079893a93892f4a84d548534598feba59da SHA256 75583a204d199ddcf9b845fc0adbaf240d7b1f08584fed5e6465982f68ffe121 DIST mothur-1.7.2.zip 547035 RMD160 6368dc45ebd9df4a40d90d45dec16f8b36727ae1 SHA1 031e522118d23f259fcbefde70b4c2369caad67f SHA256 5347e3093a7c1ac1aec85db8e79640edb8c34b4c1b2f5ee5e9791ea7097db295 +EBUILD mothur-1.13.0.ebuild 962 RMD160 699a684558d63cc7183e298cecfafb6799d168b6 SHA1 c4f0bba8544b82c0db19a49bee9686855f908b16 SHA256 ceb30b8800b4da111172b05466b9318e64a47f1cb09f3d2b9ba5033c301645c0 EBUILD mothur-1.6.0.ebuild 716 RMD160 6ca48f5fddae07fb3af31555fdb70c15d45871a0 SHA1 3094c119b60a19586ce5a9803ebf9d062cc143dc SHA256 82592ef7f15b963f43598c534b339b11052215d32a94bf5d9e8970902afe8e98 EBUILD mothur-1.7.2-r1.ebuild 687 RMD160 e9fcaa1c282d2dd2cb8187d0557c1a266addf214 SHA1 207eccc82e0e617ad79d7ea78d304eb8d56480db SHA256 5167361be77fa6ba4c91db2e39d90cb05b7ce534b9a0d9cd47a788fb409a88f3 -MISC ChangeLog 1143 RMD160 7448c2dda6bc956cdbf0b38075725c9dade1b4cf SHA1 17c4b4b30e8da386a9a382e83661abac276a5602 SHA256 c6698cb211b6fe64933aee05d29cc14c4e9f2b3bbd5d033525e830c02d1e027d +MISC ChangeLog 1258 RMD160 a308808817224610a641cd2492577b6f6f5cee6d SHA1 1d027de076ff021bfcdf98912ac03351cbdd6203 SHA256 be1a721dbcee90083ff2fe1ee3ffa9cd9a72b79075c335b32654d424e99781fe MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/mothur/mothur-1.13.0.ebuild b/sci-biology/mothur/mothur-1.13.0.ebuild new file mode 100644 index 000000000000..392961eb18b6 --- /dev/null +++ b/sci-biology/mothur/mothur-1.13.0.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/mothur-1.13.0.ebuild,v 1.1 2010/09/26 02:30:24 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs flag-o-matic + +DESCRIPTION="A suite of algorithms for ecological bioinformatics" +HOMEPAGE="http://schloss.micro.umass.edu/wiki/Main_Page" +SRC_URI="mirror://gentoo/${P}.zip" + +LICENSE="GPL-3" +SLOT="0" +IUSE="mpi +readline" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip + mpi? ( virtual/mpi )" +RDEPEND="" + +S="${WORKDIR}/Mothur.source" + +src_prepare() { + filter-ldflags -Wl,--as-needed + sed -i -e 's/CC_OPTIONS =/CC_OPTIONS = ${CXXFLAGS} /' \ + -e '/USEMPI ?=/ d' -e '/USEREADLINE ?=/ d' \ + -e 's|CC = g++|CC = '$(tc-getCXX)'|' "${S}/makefile" || die + + use mpi && sed -i '1 a USEMPI = yes' "${S}/makefile" + use readline && sed -i '1 a USEREADLINE = yes' "${S}/makefile" +} + +src_install() { + dobin mothur || die +} |