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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-12-28 19:43:37 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-12-28 19:43:37 +0000 |
| commit | 2dd988263a217d85ae2171f731ec70492fcb9fde (patch) | |
| tree | ba931a3f9a2cc279603ff6987f53d726691b1684 /sci-biology/paml | |
| parent | New package, ebuild based on Kevin Fullerton's (#185954) (diff) | |
| download | historical-2dd988263a217d85ae2171f731ec70492fcb9fde.tar.gz historical-2dd988263a217d85ae2171f731ec70492fcb9fde.tar.bz2 historical-2dd988263a217d85ae2171f731ec70492fcb9fde.zip | |
Version bump
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/paml')
| -rw-r--r-- | sci-biology/paml/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/paml/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/paml/paml-4.3b.ebuild | 48 |
3 files changed, 57 insertions, 2 deletions
diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog index 0186bf676153..7ca78a861801 100644 --- a/sci-biology/paml/ChangeLog +++ b/sci-biology/paml/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/paml # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.8 2009/11/13 17:12:58 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.9 2009/12/28 19:43:37 weaver Exp $ + +*paml-4.3b (28 Dec 2009) + + 28 Dec 2009; Andrey Kislyuk <weaver@gentoo.org> +paml-4.3b.ebuild: + Version bump 13 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> -paml-4.2b.ebuild, -paml-4b.ebuild: diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest index fceeb6f4ffc3..3596f93927e4 100644 --- a/sci-biology/paml/Manifest +++ b/sci-biology/paml/Manifest @@ -1,8 +1,10 @@ DIST paml4.1.tar.gz 2865301 RMD160 44e5eb18eb9a168c6d2f090ff45462e07234bc07 SHA1 790c83990a93baec48b55686bb350bed43fdc440 SHA256 64680a56304bb3f5cd61cfc9be253fe1fe37250cb450bceaaf76b99ee08111f1 DIST paml4.2b.tar.gz 2664576 RMD160 49465de70e9c973bd269c2808f96ce7cccc4c2ad SHA1 db9e7ce2623049665b7e3a38e14c6f69ad15ac66 SHA256 2ee29961b4e7f07983e01c3587ff5a345ba7dfefaa85352f0c9e71190f8187f8 DIST paml4.3a.tar.gz 2940883 RMD160 0427e2398c1e7983becb20cc6ddce5ba915823b9 SHA1 e1d85c1719c6428b7858944be6b4d9ecb53f5e4a SHA256 5f33f5a4bc6823381161a9abd1082c30e96dc167ebe90d8329e0006068f8d1ab +DIST paml4.3b.tar.gz 2967249 RMD160 e55d06d7cc8a0a3b204e4c8d1555697efbd2b618 SHA1 897afd1f67ebbc5daab53f617d2079796d2e2347 SHA256 98b02155c1cc2eda4045abd56f151495df8bc8f799c666e51257dcb4b09f1787 EBUILD paml-4.1.ebuild 1159 RMD160 e92d3c17407d5362b4438749c3d0d21eaad34337 SHA1 c848a2aee7e7fd0bfbde46b95899a5f84c7e58d6 SHA256 552630b699f130fa154eb719eecccc3a5ec58bfc398344aa3d54ca270fee4aa7 EBUILD paml-4.2b-r1.ebuild 1170 RMD160 9a03b6e6eb277919a2f0a9f9c2c938911085fd33 SHA1 7bbb6e8f26f83b61ebd9bf5ecdebc721c83c53af SHA256 036f85b9125c04211d599b0de85a15ffab0218a4138d22717d883d4bb2b95d14 EBUILD paml-4.3a.ebuild 1167 RMD160 724d39727f80d03d21700b504d329839befc91f9 SHA1 f5fdae3aaba960317fc660fba13483e334c663b3 SHA256 0936fd3b3680215da1e74bf3c1616244b8388d5b18594b967f69e8463211a72f -MISC ChangeLog 1286 RMD160 c56d81637d4f45919c5a680f874c83722b14c4b7 SHA1 3d3f820a29c6620352e646338757f0aceeab5bd9 SHA256 523b55bc2d353605426f5f57706de96d40e40d71b75bf186222042ebcc6f8f96 +EBUILD paml-4.3b.ebuild 1167 RMD160 cc455c55875e6996e58e79683c0bc84e003cf409 SHA1 fe3785b3d8db64fbc5882523ebd97dff73d2b336 SHA256 0192e82059ec0bd10906a9968145d5bc8f05b85883d6bb8d0b96f0561edee573 +MISC ChangeLog 1397 RMD160 9c8c1cbc6c6ab84ca8e18078dd676c3cfbb8c5ae SHA1 994814c8e732579f77ccd27b1a837bcad166ca87 SHA256 21fdc5da5a5fc6a2670c8a567c6f7be6aa33b5f323e6ff2ac32435f4d9cfebf5 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f diff --git a/sci-biology/paml/paml-4.3b.ebuild b/sci-biology/paml/paml-4.3b.ebuild new file mode 100644 index 000000000000..d3d5016451e9 --- /dev/null +++ b/sci-biology/paml/paml-4.3b.ebuild @@ -0,0 +1,48 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.3b.ebuild,v 1.1 2009/12/28 19:43:37 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs + +MY_P="${PN}43" +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" + +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + sed -i 's/-static//' "${S}/src/Makefile.UNIX" || die +} + +src_compile() { + cd src + emake \ + -f Makefile.UNIX \ + CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" \ + || die "make failed" +} + +src_install() { + pushd "${S}"/src + dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 || die + popd + dodoc README.txt doc/* + insinto /usr/share/${PN}/control + doins *.ctl || die "Failed to install control files" + insinto /usr/share/${PN}/dat + doins stewart* *.dat dat/* || die "Failed to install data files" + insinto /usr/share/${PN} + doins -r examples/ || die "Failed to install examples" +} |