diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2013-02-18 07:33:32 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-02-18 07:33:32 +0000 |
| commit | fc64d3ad9de2b80730ad0aa88b6e7279dc699c37 (patch) | |
| tree | d30fff0f1a999079e7206bb262f643f11b0eaa25 /sci-biology/phyml | |
| parent | sci-biology/sibsim4: Drop Old (diff) | |
| download | historical-fc64d3ad9de2b80730ad0aa88b6e7279dc699c37.tar.gz historical-fc64d3ad9de2b80730ad0aa88b6e7279dc699c37.tar.bz2 historical-fc64d3ad9de2b80730ad0aa88b6e7279dc699c37.zip | |
sci-biology/phyml: Drop Old
Package-Manager: portage-2.2.0_alpha162/cvs/Linux x86_64
Manifest-Sign-Key: 0x70EB7916
Diffstat (limited to 'sci-biology/phyml')
| -rw-r--r-- | sci-biology/phyml/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/phyml/Manifest | 23 | ||||
| -rw-r--r-- | sci-biology/phyml/metadata.xml | 4 | ||||
| -rw-r--r-- | sci-biology/phyml/phyml-2.4.5.ebuild | 31 |
4 files changed, 13 insertions, 51 deletions
diff --git a/sci-biology/phyml/ChangeLog b/sci-biology/phyml/ChangeLog index 2ab66a805f16..d8759a791223 100644 --- a/sci-biology/phyml/ChangeLog +++ b/sci-biology/phyml/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/phyml # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/ChangeLog,v 1.9 2013/02/17 18:42:55 ago Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/ChangeLog,v 1.10 2013/02/18 07:33:31 jlec Exp $ + + 18 Feb 2013; Justin Lecher <jlec@gentoo.org> -phyml-2.4.5.ebuild, + metadata.xml: + Drop Old 17 Feb 2013; Agostino Sarubbo <ago@gentoo.org> phyml-2.4.5-r2.ebuild: Stable for x86, wrt bug #328425 diff --git a/sci-biology/phyml/Manifest b/sci-biology/phyml/Manifest index 7845fafdbbca..b5e597120e05 100644 --- a/sci-biology/phyml/Manifest +++ b/sci-biology/phyml/Manifest @@ -1,25 +1,14 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA512 +Hash: SHA256 DIST phyml_v2.4.5.tar.gz 92143 SHA256 e8a1d3980137f8e528d0e59472aff37dbac615860a7d3ee4cdb64f30dfea296e SHA512 119716290eca0de4da05b0bacbec96139f4c89f6a033b861d1cb2655a620766bd0bea0675c4d7722a31d888652a28bf3544a643f39f11682982ede80dc5928c3 WHIRLPOOL e9c0e36ea871c61fc617ed0a10d306bdb66d84da0b9a08107fb9e1f6370e10676c5ad8a0a5e5404ccad6ae2f62551d566614a173cfdd4a0a523f727fc7924ce0 EBUILD phyml-2.4.5-r2.ebuild 714 SHA256 0b57f177a05672d7bba7ba093a75c272e2df85d534d3c2983cc4a10d94925dd7 SHA512 b1ad297fd29b75c764ba2e8440739dd9d9b8d302099d2710e3c65f8710eb4d6ba944ca01937eff6aef9f895db7d3b3ae16304bbc3461b3a1ef71ff8e0364978e WHIRLPOOL 36b9d8880b4a5e9cdbeea90a42de16545996c0e8beec8fa3114fa0e4c08666190e0883eb8da355d0e5675b15d0ff469eb9a47203f4c5b24a68f1440e222bf5c4 -EBUILD phyml-2.4.5.ebuild 715 SHA256 bffdefef389511fb6b42b36d9392f0bd9a53812a8003224948606021273c201e SHA512 01978b5c29e88d83e0edf27d553b8bd3aaa29f9c6665138dc90c4e954722ac621ede06628d97100cbaf02b3aa2b9ba6dccd7b573710724956d58226c79b7b3a0 WHIRLPOOL 45da2bf73647f4b00343fe81d40c6f6a8ba0364f8243a659e8bebf9362630fba482eeb11e7e84763ee1006a76a97dae574c085b794ae62e3fbdea7d7c0a5b2e5 -MISC ChangeLog 1413 SHA256 60965e18b670d79314dae396086153af442427f60bb12a407bc0d6f743fc2606 SHA512 d6a8b066d3a6b3311c4d276fa0ca0355b8bfb6c718bf4d07d0fc726923cf9969a3bd13100ce774b83a8f00cae349ce082363def4be3d0f22275b96fb574bf794 WHIRLPOOL 89dbdd59a1954d17486e564608ea4616b48e04c68f63c0431323153375a2ab31a87664b6f305567b77c90a56ef17bbe374a1f97f92ca685b1fbdf234ad394667 -MISC metadata.xml 471 SHA256 de8e1579b6bc09e581961036083d6947e0f968447106d130a5dd11e90ba9c5d6 SHA512 1800258d7f882a285e8d733602dfbe57de646010830cb76a629f84da410e31380fc4acf28ddcffe2162ec7a723ccbec35430945f1cdaee2b742a129b73903bd5 WHIRLPOOL feea032e96c7889b431f98f840ed0a8085211eeb12c41e9e2be358c5ecb584e39998b5fd53e0473cab0bfd3e9c5a76e97f9d7e502c75da2b8f2b28595d6a3547 +MISC ChangeLog 1511 SHA256 ae2edf9628f13056b1b540624085490040afc68d684de9deed67398a6f787fe1 SHA512 f54a5019cccc2fdfe60751e1d616f54f871ebc9ba310243eb8097735f5c923b83353aa3fb0172cfa14905169b13d24e56da5aabb05427420e8b385ae0a2d7c0e WHIRLPOOL 339ee6b4e9d0d1bd3e4f36722274f76fe21c2a0746852621def6a06aa9d832b471dfd0660fe7fd8c4d32278875623e2da88aad236c0272db101efe885fdfef0e +MISC metadata.xml 473 SHA256 1571527f16e52126dbd7996a6a5c1461414f59e055e569bfc1956dd47c167df9 SHA512 7c11b9f5928b6a773cdb1df7eb884cf1d6d773c04242e7ead55a3aea05058a092e50066b321651bc8e834ae768d1a5c0bd183d63ef6a59252c4b4aaa7ca053a4 WHIRLPOOL c17a575204ac248e60406223df318d8791c0ba862bae22ea119f2bf6db32e5abe49d902e1c0196945e39e0246f9d1c7fdea6070712e90ef153fe42bf740a3898 -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.19 (GNU/Linux) -iQIcBAEBCgAGBQJRISSwAAoJELp701BxlEWfEhsP/1XMLxvuMvLrKiT6PKteEmKN -aQUS1+ckpxkUbJik8CljUMC1b0FbrYmU4Alo+NNpL7D0nRSn2atg803g7uV1tIEd -KJ4ghJPNvh3Iy6qOUixEhB2djGy+qEBeT4eOb7FffsHtF75p8+3Vy7pc0jKOC64T -rTpU1IK1V80OGuRa2IY7MEvA11wssfC35msQtTuMbHFlisph2k3SNubBF207F9vs -d5WHDeeCuFnxsCpJaHU2ez2+sq6/UN/y1l26T8G6J+ZTYWGI8oyT8GmKoVSyMKyB -DbkZvnfjNfHcbLwo5oEHAMbNDQEUaYgpmsNOkBHebH07hPsamV3UM3ZpO+/RZs9Z -Blho+dYRdB2SZvC6wBIo9wPZPUsLi0XCPjcmyvExxp8DLonUeDhgLMYp8g7Q6sBa -m6NZQHRLM6lYLx5qYXIp0RHMYpSTgFGimZaUBRpxeIt4XVOXGDcsi4rIyLaRwSV0 -cQKkxYnV1zXKD2e6IrI6M1P3caxzaduWCQH5D8klfBSNZqlxXNVf/E3IlmnxRChQ -oLWDXczfaV1+WNF2L5ylf2MFPyF79rMGknovOHmvtHzdITFnc6TL1uc3Kbn4avgy -9FODoiafmfWLK9GSO9KI6ovijIgJo/vJmCu6HSw7mf8ve9pABrUyrM/udx2tk3YQ -sF43KGAyrGJVQvrrQ8Qg -=KeFN +iEYEAREIAAYFAlEh2UgACgkQgAnW8HDreRZAuACbBAIx3INUGTyxnWz/UTFxqKE/ +SlYAn3jofRN3g9xBNq3E0lvgs5Yz/SEl +=xyHW -----END PGP SIGNATURE----- diff --git a/sci-biology/phyml/metadata.xml b/sci-biology/phyml/metadata.xml index ba1479ccd999..d0355f85e406 100644 --- a/sci-biology/phyml/metadata.xml +++ b/sci-biology/phyml/metadata.xml @@ -1,8 +1,8 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <herd>sci-biology</herd> - <longdescription lang="en"> + <herd>sci-biology</herd> + <longdescription lang="en"> Phyml is a simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Given input sequence files, it estimates phylogenies using maximum likelihood, and is capable of diff --git a/sci-biology/phyml/phyml-2.4.5.ebuild b/sci-biology/phyml/phyml-2.4.5.ebuild deleted file mode 100644 index 929df30fb96b..000000000000 --- a/sci-biology/phyml/phyml-2.4.5.ebuild +++ /dev/null @@ -1,31 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/phyml-2.4.5.ebuild,v 1.3 2010/10/22 15:44:40 xarthisius Exp $ - -DESCRIPTION="A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood." -HOMEPAGE="http://atgc.lirmm.fr/phyml/" -SRC_URI="http://www.lirmm.fr/~guindon/${PN}_v${PV}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="" - -DEPEND="" -RDEPEND="" - -S=${WORKDIR}/${PN}_v${PV} - -src_unpack() { - unpack ${A} - cd "${S}" - sed -i -e 's/^hello !!!//' -e 's/^CFLAGS =/#CFLAGS =/' -e 's/^CC =/#CC =/' Makefile -} - -src_compile() { - make -} - -src_install() { - dobin phyml -} |