Version Bump, cleaned old

Package-Manager: portage-2.2.0_alpha84/cvs/Linux x86_64

5 files changed, 17 insertions, 121 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 8cb298b9f0e9..623ee9a1d707 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/rebase
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.109 2011/11/28 11:43:41 phajdan.jr Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.110 2012/02/03 10:02:46 jlec Exp $
+
+*rebase-1202 (03 Feb 2012)
+
+  03 Feb 2012; Justin Lecher <jlec@gentoo.org> -rebase-1103.ebuild,
+  -rebase-1104.ebuild, -rebase-1106.ebuild, +rebase-1202.ebuild:
+  Version Bump, cleaned old
 
   28 Nov 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org> rebase-1105.ebuild:
   x86 stable wrt bug #391615
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 54bd9bca54df..19f2d5ea5db3 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -2,23 +2,19 @@
 Hash: SHA512
 
 DIST rebase-1006.tar.xz 21163928 RMD160 98fd3a9d8a82a663e420fc2948de0280b44d0f1c SHA1 095b8030cb5ab47d2e519ce5f7046eeef0522e3d SHA256 9d5dd0429f4000cd0a4a96a9631d48eeea8fd4e6868b344a4e636cc43e1c7fdd
-DIST rebase-1103.tar.xz 18171976 RMD160 8d96576b56112ebe90a8bf4e8f5a45164573e9f5 SHA1 02bc451d06c4b821b13d4ee4e9fcecc0bc59e2a5 SHA256 241b8ee9e8840b33545996e39529e9ec1cf54723f5c599a050907da8f5f837cf
-DIST rebase-1104.tar.xz 18310220 RMD160 a9279e27c85092decd0572087c5f941bea058ff8 SHA1 fefdd21f06ab32d7bbbf8d6a6e3113af0b499bdd SHA256 9240405bd18d74a4fabc398eacc463a2e9ef7334ca8cde23f9980e8c7558cb34
 DIST rebase-1105.tar.xz 18584656 RMD160 86811fb9135452475cc5e275fd5df2025a41ce23 SHA1 d513a2210963de0a98569d79c4c8a2a2fbe2bc3f SHA256 e10365a15e280f5166104149df437683904bf0e2eef613823f3768b4da8ff17d
-DIST rebase-1106.tar.xz 19673448 RMD160 3fe887c10755f84d9c776ba8b2f761d97fcddc0c SHA1 7d48b5e2b09a6b2715c0a4352e4acadeee99bb00 SHA256 d9a41abaf800b54e813131dfd016d6079a4c08ac0d8eeeac5784092b45efd7cd
 DIST rebase-1111.tar.xz 27905208 RMD160 cf5af90f97b9a19f4a74673352dc154ac8c2087b SHA1 ba3f4aa2bab6a25c1865561d0b5584cace614a18 SHA256 a4071740cf41afdbae0ecb91648bae954b8b708b00d4b0d6bb21a746f6a9201c
+DIST rebase-1202.tar.xz 25806116 RMD160 ff5050d545712f0b0d64b07fec6b66c529b23836 SHA1 bb4ea5a15cc914e891649f746d890f1a855bd775 SHA256 ac3dae93c43d44721a35cb97b1360500782367190750e47cd7dc9d71c2a6d851
 EBUILD rebase-1006.ebuild 1509 RMD160 be91cb8ef42d840dc65503fa1fb190f1656d5a79 SHA1 7716fb2c43eeaf2364ac5990d05f795434e70f85 SHA256 0a195f60280d922265e7ad9754cc326b4160f73e501d8af9d23c35746e03c446
-EBUILD rebase-1103.ebuild 1564 RMD160 669c03f787a5cd2acbd5a2e601c0c9fcaa834b5b SHA1 5a672ed186e0985639d5bc4aed15c684bd8a20d4 SHA256 8caf7f709ea42610c812b6acc5db8387729c0ec503bf600a203e600cc480fc44
-EBUILD rebase-1104.ebuild 1564 RMD160 1a4a0ef76e78e56d01df1290615c0b4dfe2584d4 SHA1 ba0559728736649f9880edbb75ba3c06db12b440 SHA256 69b2ab8e0568adbe15edb7a6f7dfdddb27c8ac59514050528881b2a6ac0399cb
 EBUILD rebase-1105.ebuild 1562 RMD160 f2e73034259931023ea550b767a641779549228e SHA1 9aa47081b0bdde8474ea9a0eb6319e1d85945e2a SHA256 371139a012fddeb57042917425a61681a92510731dd4e18abd9da1038312b739
-EBUILD rebase-1106.ebuild 1564 RMD160 19a162ca18142f4da1ebf334aafd5d4ae3ac6cfd SHA1 2ea846da797d6bea7a523efa52dd0c08e1bf3418 SHA256 7d4de5840498f7471532b4cb4b15d1ef4b472d49dc91aad59e49de356b620929
 EBUILD rebase-1111.ebuild 1558 RMD160 784cffb9dafd34e4d5f07df7d0cb19c473595b06 SHA1 1142c6240674140a7eff10f20d1bfbbccfbe071e SHA256 8559730d18addfd969addca90825831c20ace9a8bced5678fe19d65f473462f1
-MISC ChangeLog 14354 RMD160 67cd985e1aae769c7148877880e88da17055e245 SHA1 068537d617f51ebeeba32f84e314aa5b64672fd3 SHA256 f0aea0fd8a6cb0e43dc48aae84894cfca744de0e603b0286190ec02248e62248
+EBUILD rebase-1202.ebuild 1558 RMD160 fb75b42c28d71091a9aa1ccf87d2b531055c1989 SHA1 fcfd87b525d1df2810bb88e865c6441e8734d797 SHA256 27543b7a349980366c7e505e98d23f06bc6bd8ceea346323267fd39d2b1a9ab7
+MISC ChangeLog 14538 RMD160 2f20e3314a35d3831b32b82e357862b3f1220822 SHA1 30030b1b2112effff297b8761c8c2b995394588b SHA256 0ce71bd247d8f8e899aabb617ff845273bc3267d237b5d85a277b496fd4d0ec8
 MISC metadata.xml 811 RMD160 f1dd0a77488312defebf403ac55aa57e4d15bcdc SHA1 6fefbf2aa855c5aba0ff15dfb9c3ea90bd104482 SHA256 65603e5b252a8afc1f9e2a5db69d8dcac525f6dc669cbe1eb23bc47624c8bde2
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.17 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
-iEYEAREKAAYFAk7Tc/MACgkQuUQtlDBCeQJFNgCfZodu3DXzS4kmCl0yi/Xf+fEu
-nWEAn0f5hsICkrwupSdj14hYD6MzDO1x
-=1Til
+iEYEAREKAAYFAk8rsNAACgkQgAnW8HDreRaUWQCfRRALtt3SeDfGLqRjwpQ18HyR
+Y5MAoJkfqZv48Jm6i+9u6VlrqwPZFKMV
+=JH+7
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/rebase/rebase-1104.ebuild b/sci-biology/rebase/rebase-1104.ebuild
deleted file mode 100644
index 46112ca03ae3..000000000000
--- a/sci-biology/rebase/rebase-1104.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1104.ebuild,v 1.2 2011/08/09 15:36:16 xarthisius Exp $
-
-EAPI="3"
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="
-	mirror://gentoo/${P}.tar.xz
-	http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-	if use emboss; then
-		echo; einfo "Indexing Rebase for usage with EMBOSS."
-		mkdir REBASE
-		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-				-protofile proto.${MY_PV} -equivalences \
-				|| die "Indexing Rebase failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		insinto /usr/share/${PN}
-		doins withrefm.${MY_PV} proto.${MY_PV} || die \
-				"Failed to install raw database."
-	fi
-	newdoc REBASE.DOC README || die "Failed to install documentation."
-	if use emboss; then
-		insinto /usr/share/EMBOSS/data/REBASE
-		doins REBASE/embossre.{enz,ref,sup} || die \
-				"Failed to install EMBOSS data files."
-		insinto /usr/share/EMBOSS/data
-		doins REBASE/embossre.equ \
-				|| die "Failed to install enzyme prototypes file."
-	fi
-}
diff --git a/sci-biology/rebase/rebase-1106.ebuild b/sci-biology/rebase/rebase-1106.ebuild
deleted file mode 100644
index 8345bf05f57c..000000000000
--- a/sci-biology/rebase/rebase-1106.ebuild
+++ /dev/null
@@ -1,53 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1106.ebuild,v 1.2 2011/08/09 15:36:16 xarthisius Exp $
-
-EAPI="3"
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="
-	mirror://gentoo/${P}.tar.xz
-	http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-	if use emboss; then
-		echo; einfo "Indexing Rebase for usage with EMBOSS."
-		mkdir REBASE
-		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-				-protofile proto.${MY_PV} -equivalences \
-				|| die "Indexing Rebase failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		insinto /usr/share/${PN}
-		doins withrefm.${MY_PV} proto.${MY_PV} || die \
-				"Failed to install raw database."
-	fi
-	newdoc REBASE.DOC README || die "Failed to install documentation."
-	if use emboss; then
-		insinto /usr/share/EMBOSS/data/REBASE
-		doins REBASE/embossre.{enz,ref,sup} || die \
-				"Failed to install EMBOSS data files."
-		insinto /usr/share/EMBOSS/data
-		doins REBASE/embossre.equ \
-				|| die "Failed to install enzyme prototypes file."
-	fi
-}
diff --git a/sci-biology/rebase/rebase-1103.ebuild b/sci-biology/rebase/rebase-1202.ebuild
index 929a4bdc1f23..9cfd19d1c170 100644
--- a/sci-biology/rebase/rebase-1103.ebuild
+++ b/sci-biology/rebase/rebase-1202.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1103.ebuild,v 1.2 2011/08/09 15:36:16 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1202.ebuild,v 1.1 2012/02/03 10:02:46 jlec Exp $
 
 EAPI="3"