diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2013-04-26 10:15:59 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-04-26 10:15:59 +0000 |
| commit | 3c2a978cd2114b1c19e1240e4bfc99ed07447041 (patch) | |
| tree | 4c5bf4ee0958171f7f12468a3be8bcba11b8bce8 /sci-biology | |
| parent | Use AC_CONFIG_HEADERS instead of AM_CONFIG_HEADER for automake-1.13 compabili... (diff) | |
| download | historical-3c2a978cd2114b1c19e1240e4bfc99ed07447041.tar.gz historical-3c2a978cd2114b1c19e1240e4bfc99ed07447041.tar.bz2 historical-3c2a978cd2114b1c19e1240e4bfc99ed07447041.zip | |
sci-biology/biopython: Version Bump
Package-Manager: portage-2.2.0_alpha173/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/biopython/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/biopython/Manifest | 24 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.61.ebuild | 52 | ||||
| -rw-r--r-- | sci-biology/biopython/metadata.xml | 2 |
4 files changed, 69 insertions, 19 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index 055bcb5ee1ad..7f2823ec82e7 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/biopython -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.68 2012/12/14 10:00:10 ulm Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.69 2013/04/26 10:15:58 jlec Exp $ + +*biopython-1.61 (26 Apr 2013) + + 26 Apr 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.61.ebuild, + metadata.xml: + Version Bump 14 Dec 2012; Ulrich Müller <ulm@gentoo.org> biopython-1.57.ebuild, biopython-1.58.ebuild, biopython-1.59.ebuild: diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index 9b1bea71ed97..938ac488cc9f 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -1,29 +1,21 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA256 +Hash: SHA512 AUX biopython-1.51-flex.patch 782 SHA256 ad957b435fc70b218a7a65eb492b0eae5f82b7c6371d2f1451c9dd714fa056dc SHA512 4d7adf0716d8de840e0c7ef3415d16056a933ec457451e17fd83029e70bcb7c18db8aaf1c9c101a64205eea6f79cd68b78331c6a5a4133bf755ea7c1d5301e83 WHIRLPOOL 194117f335c6c7abc567f6e9365eeef8f8eec4526aac2a0af6f07b7ce026074dc4be024bc8ce1a1f40182d50eb2c241da7b0656f2a42cb19eecd3088dd9148e1 DIST biopython-1.57.tar.gz 6945024 SHA256 07c16a86127770c8d5b653a6e82fee0999159f7284a3a01c98cf66ed2f0ec4a0 DIST biopython-1.58.tar.gz 8035063 SHA256 f9183facf01d3b0b489401f43a0cae8249c3dd1f7452d939f137980f5e683e73 DIST biopython-1.59.tar.gz 8577492 SHA256 588abf55de3d8e4deac611a0f810a9c5d9ce7e5868d3064f79efe6cabd18cacb SHA512 235cbe0689f9a72fe4a0713cd6c5b963b0351f7565405ef643001df14c1c5809f023f7612c5253f2487eca123f2d6fe5b66bf817d511fa82155f509edaaf5096 WHIRLPOOL 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/var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild,v 1.1 2013/04/26 10:15:58 jlec Exp $ + +EAPI=5 + +PYTHON_COMPAT=( python{2_6,2_7} ) + +inherit distutils-r1 + +DESCRIPTION="Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="HPND" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="mysql postgres" + +RDEPEND=" + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/reportlab[${PYTHON_USEDEP}] + media-gfx/pydot[${PYTHON_USEDEP}] + mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] ) + postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )" +DEPEND="${RDEPEND} + sys-devel/flex" + +#PYTHON_CFLAGS=("2.* + -fno-strict-aliasing") + +#DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1" +DOCS=( CONTRIB DEPRECATED NEWS README ) +#PYTHON_MODNAME="Bio BioSQL" + +#PATCHES=( "${FILESDIR}"/${PN}-1.51-flex.patch ) + +python_test() { + cd Tests + ${PYTHON} run_tests.py +} + +python_install_all() { + distutils-r1_python_install_all + + insinto /usr/share/doc/${PF} + doins -r Doc/* + insinto /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die +} diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml index 34294c65ca04..f17a827e3101 100644 --- a/sci-biology/biopython/metadata.xml +++ b/sci-biology/biopython/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> -<herd>sci-biology</herd> + <herd>sci-biology</herd> </pkgmetadata> |