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| author |   Olivier Fisette <ribosome@gentoo.org> | 2005-05-13 01:54:59 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2005-05-13 01:54:59 +0000 |
| commit | 5531a875d9d1e4512a5f568a29a56262da28cd4b (patch) | |
| tree | 89b8440455428eae3ed903309da6841f31948c0a /sci-biology | |
| parent | make sure dev-games/guichan is built with USE=sdl #92362 (diff) | |
| download | historical-5531a875d9d1e4512a5f568a29a56262da28cd4b.tar.gz historical-5531a875d9d1e4512a5f568a29a56262da28cd4b.tar.bz2 historical-5531a875d9d1e4512a5f568a29a56262da28cd4b.zip | |
New version
Package-Manager: portage-2.0.51.19
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/qrna/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/qrna/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/qrna/files/digest-qrna-2.0.3b | 1 | ||||
| -rw-r--r-- | sci-biology/qrna/qrna-2.0.3b.ebuild | 55 |
4 files changed, 66 insertions, 13 deletions
diff --git a/sci-biology/qrna/ChangeLog b/sci-biology/qrna/ChangeLog index 04bc086cd37d..c4ad22e9d52f 100644 --- a/sci-biology/qrna/ChangeLog +++ b/sci-biology/qrna/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/qrna -# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.3 2004/12/23 18:24:03 swegener Exp $ +# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.4 2005/05/13 01:54:59 ribosome Exp $ + +*qrna-2.0.3b (13 May 2005) + + 13 May 2005; Olivier Fisette <ribosome@gentoo.org> +qrna-2.0.3b.ebuild: + New version. *qrna-2.0.2c (23 Dec 2004) diff --git a/sci-biology/qrna/Manifest b/sci-biology/qrna/Manifest index 6ebef5072ab5..180c8726a593 100644 --- a/sci-biology/qrna/Manifest +++ b/sci-biology/qrna/Manifest @@ -1,15 +1,7 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - +MD5 39b495aeaa79d837eafe1b311eae4a99 qrna-2.0.3b.ebuild 1327 MD5 6ccfb9d7cf660b0dc339d5ef8c9f85cc qrna-2.0.2c.ebuild 897 -MD5 b6ed2372ef5df30d362a597ea613457e ChangeLog 937 +MD5 393bbffcac028e8358b84673f8fc2532 ChangeLog 1055 MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254 MD5 9127b0a4628230fc3bf2e201ca7519a9 files/26qrna 30 MD5 23a5277d2c657c4624bc93b197c51020 files/digest-qrna-2.0.2c 57 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v1.9.10 (GNU/Linux) - -iD8DBQFByw1JI1lqEGTUzyQRAvmMAKCOhk6e1JtupKOvNqSPSinIaH9ljQCfZYWP -4CZs8JDQw0cjEdPP0olZNr0= -=BY3L ------END PGP SIGNATURE----- +MD5 37c729a337a1eba6eda00b69f3d5f608 files/digest-qrna-2.0.3b 65 diff --git a/sci-biology/qrna/files/digest-qrna-2.0.3b b/sci-biology/qrna/files/digest-qrna-2.0.3b new file mode 100644 index 000000000000..43177b62e6db --- /dev/null +++ b/sci-biology/qrna/files/digest-qrna-2.0.3b @@ -0,0 +1 @@ +MD5 4258ab809070c2e6fe10a262b95f24ba qrna-2.0.3b.tar.bz2 8988306 diff --git a/sci-biology/qrna/qrna-2.0.3b.ebuild b/sci-biology/qrna/qrna-2.0.3b.ebuild new file mode 100644 index 000000000000..ff596d6b2be7 --- /dev/null +++ b/sci-biology/qrna/qrna-2.0.3b.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3b.ebuild,v 1.1 2005/05/13 01:54:59 ribosome Exp $ + +inherit toolchain-funcs + +DESCRIPTION="Prototype ncRNA genefinder" +HOMEPAGE="http://www.genetics.wustl.edu/eddy/software/" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="GPL-2" + +SLOT="0" +KEYWORDS="~x86 ~ppc ~amd64" +IUSE="" + +DEPEND="dev-lang/perl + virtual/libc" + +src_compile () { + sed -e "s/CC = gcc/CC = $(tc-getCC)/" \ + -e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \ + -i src/Makefile squid/Makefile + sed -e "s/CC = gcc/CC = $(tc-getCC)/" \ + -e "s/CFLAGS = -g -O2/CFLAGS = ${CFLAGS}/" \ + -i squid02/Makefile + cd ${S}/squid + emake || die + cd ${S}/squid02 + emake || die + cd ${S}/src + emake || die +} + +src_install () { + cd ${S}/src + dobin cfgbuild eqrna eqrna_sample main rnamat_main shuffle + cd ${S}/squid02 + dobin afetch alistat compalign compstruct revcomp seqsplit seqstat \ + sfetch shuffle sindex sreformat translate weight + cd ${S} + dobin scripts/* + + newdoc 00README + insinto /usr/share/doc/${PF} + doins documentation/* + + insinto /usr/share/${PN}/data + doins lib/* + insinto /usr/share/${PN}/demos + doins Demos/* + + # Sets the path to the QRNA data files. + insinto /etc/env.d + doins ${FILESDIR}/26qrna +} |