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authorUlrich Müller <ulm@gentoo.org>2008-08-06 14:58:18 +0000
committerUlrich Müller <ulm@gentoo.org>2008-08-06 14:58:18 +0000
commit6541d37d1caa6f7b098194b7880e39f1587ec661 (patch)
tree9c4ce5bf468da61ba31cf127d0260c4ca9a68a81 /sci-biology
parentSet VARTEXFONTS to prevent potential problems with latex font generation, bug... (diff)
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Add USE flag description to metadata wrt GLEP 56.
Package-Manager: portage-2.2_rc3/cvs/Linux 2.6.25-gentoo-r6 i686
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/biopython/ChangeLog5
-rw-r--r--sci-biology/biopython/metadata.xml14
-rw-r--r--sci-biology/clustalw-mpi/ChangeLog7
-rw-r--r--sci-biology/clustalw-mpi/metadata.xml16
-rw-r--r--sci-biology/hmmer/ChangeLog5
-rw-r--r--sci-biology/hmmer/metadata.xml6
6 files changed, 38 insertions, 15 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
index 5620146e1938..127fa2230028 100644
--- a/sci-biology/biopython/ChangeLog
+++ b/sci-biology/biopython/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/biopython
# Copyright 2002-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.25 2008/07/14 16:57:21 nixnut Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.26 2008/08/06 14:53:49 ulm Exp $
+
+ 06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
+ Add USE flag description to metadata wrt GLEP 56.
14 Jul 2008; nixnut <nixnut@gentoo.org> biopython-1.44.ebuild:
Stable on ppc wrt bug 221159
diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml
index ebbff811d3b4..4ee48806ffc6 100644
--- a/sci-biology/biopython/metadata.xml
+++ b/sci-biology/biopython/metadata.xml
@@ -1,9 +1,13 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>ribosome@gentoo.org</email>
- <name>Olivier Fisette</name>
- </maintainer>
- <herd>sci-biology</herd>
+<maintainer>
+ <email>ribosome@gentoo.org</email>
+ <name>Olivier Fisette</name>
+</maintainer>
+<herd>sci-biology</herd>
+<use>
+ <flag name='kdtree'>Do not build KDTree module and its dependencies
+ (NeighborSearch)</flag>
+</use>
</pkgmetadata>
diff --git a/sci-biology/clustalw-mpi/ChangeLog b/sci-biology/clustalw-mpi/ChangeLog
index b7d0df1a668d..b3f07dc37dd7 100644
--- a/sci-biology/clustalw-mpi/ChangeLog
+++ b/sci-biology/clustalw-mpi/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/clustalw-mpi
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw-mpi/ChangeLog,v 1.4 2007/02/22 01:24:52 jokey Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw-mpi/ChangeLog,v 1.5 2008/08/06 14:56:18 ulm Exp $
+
+ 06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
+ Add USE flag description to metadata wrt GLEP 56.
22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog:
Redigest for Manifest2
diff --git a/sci-biology/clustalw-mpi/metadata.xml b/sci-biology/clustalw-mpi/metadata.xml
index ebbff811d3b4..6558c0dabff9 100644
--- a/sci-biology/clustalw-mpi/metadata.xml
+++ b/sci-biology/clustalw-mpi/metadata.xml
@@ -1,9 +1,15 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>ribosome@gentoo.org</email>
- <name>Olivier Fisette</name>
- </maintainer>
- <herd>sci-biology</herd>
+<maintainer>
+ <email>ribosome@gentoo.org</email>
+ <name>Olivier Fisette</name>
+</maintainer>
+<herd>sci-biology</herd>
+<use>
+ <flag name='mpi_njtree'>Use MPI (as opposed to serial) code for computing
+ neighbor-joining trees</flag>
+ <flag name='static_pairalign'>Use static (as opposed to dynamic) scheduling
+ for pair alignments</flag>
+</use>
</pkgmetadata>
diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog
index b28bde0b9f89..b308da9cd741 100644
--- a/sci-biology/hmmer/ChangeLog
+++ b/sci-biology/hmmer/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/hmmer
# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.22 2008/02/07 14:39:22 grobian Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.23 2008/08/06 14:58:18 ulm Exp $
+
+ 06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
+ Add USE flag description to metadata wrt GLEP 56.
07 Feb 2008; Fabian Groffen <grobian@gentoo.org> hmmer-2.3.2-r1.ebuild,
hmmer-2.3.2-r2.ebuild:
diff --git a/sci-biology/hmmer/metadata.xml b/sci-biology/hmmer/metadata.xml
index d4648212cbad..d7cabd4bc1fd 100644
--- a/sci-biology/hmmer/metadata.xml
+++ b/sci-biology/hmmer/metadata.xml
@@ -1,5 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci-biology</herd>
+<herd>sci-biology</herd>
+<use>
+ <flag name='pvm'>Add support for parallel virtual machine
+ (<pkg>sys-cluster/pvm</pkg>)</flag>
+</use>
</pkgmetadata>