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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-05-02 23:48:39 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-05-02 23:48:39 +0000 |
| commit | 6f364fd0eae4f20ddeb359bb1e3facf6f92f1353 (patch) | |
| tree | 7759e34604c1a98f576d90c71a80ca8bc4c9e915 /sci-biology | |
| parent | Version bump, applied patch from bug 266383. (diff) | |
| download | historical-6f364fd0eae4f20ddeb359bb1e3facf6f92f1353.tar.gz historical-6f364fd0eae4f20ddeb359bb1e3facf6f92f1353.tar.bz2 historical-6f364fd0eae4f20ddeb359bb1e3facf6f92f1353.zip | |
Version bump
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/bowtie/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.9.9.2.ebuild | 29 |
3 files changed, 38 insertions, 12 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog index 0d6f6a085e65..1d56efc50429 100644 --- a/sci-biology/bowtie/ChangeLog +++ b/sci-biology/bowtie/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/bowtie # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.2 2009/04/23 19:15:58 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.3 2009/05/02 23:48:39 weaver Exp $ + +*bowtie-0.9.9.2 (02 May 2009) + + 02 May 2009; Andrey Kislyuk <weaver@gentoo.org> +bowtie-0.9.9.2.ebuild: + Version bump 23 Apr 2009; Markus Meier <maekke@gentoo.org> bowtie-0.9.9.1: amd64/x86 stable, bug #266869 diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest index 0705f2665c6e..ace99dd6eafa 100644 --- a/sci-biology/bowtie/Manifest +++ b/sci-biology/bowtie/Manifest @@ -1,14 +1,6 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - DIST bowtie-0.9.9.1-src.zip 10368568 RMD160 91caef019a7dd7f576b11c13fe1fbf9233ee4924 SHA1 701d6ad400f624085d38e8106a3c3779860d0be0 SHA256 5b652222f3934d9127c77f779cdff18fd37ef913fe9207d77e978eada11b0e31 +DIST bowtie-0.9.9.2-src.zip 10234128 RMD160 ad728d8f23742ece2d9d2bfe708b76cdcabf32b0 SHA1 f1d2afd5391d08f7481fe0eb5f38e9d3878e9598 SHA256 c002647a0412ed736cfbd879b3a3194286d2973c6e3e32b2f7d749bebbd96228 EBUILD bowtie-0.9.9.1.ebuild 803 RMD160 5dd902f5b54309983ed16a71afb1b2cce137a4c9 SHA1 5ea28ceb989c3132d0bc3e74fccbaf312d1afd2f SHA256 7b5573ce3a66751b2b7d79e2f390aa9554691c2d459c6485793f010121bbd3ac -MISC ChangeLog 576 RMD160 9cfb2f2463d3dd23d20d9e8b8e53372304b6f518 SHA1 a2d3f8e28ac67ba708a145ecfbbda9fdb4fa41cd SHA256 966dda8ca2a029290d9ebc8cc7c7a0d433a96002885d2390949547a2e7a1b11a +EBUILD bowtie-0.9.9.2.ebuild 803 RMD160 02b3cc8d5fc424b1ab859ca3b5556f59c09cbfa4 SHA1 5a910d97e8112e54ed8bb52346f3834498c22b7d SHA256 837f262ce03aeda12bf4a63d833fde9ce2e43eb633c9fd58ab3835c38467690b +MISC ChangeLog 697 RMD160 b03b61c6cfe17e77ed15df317e62ae250671c317 SHA1 3bb0a764efa05bbddd062bd330302586b51a92a2 SHA256 d82c769c09019013674d1ec6edcd9a032bfb02fe550a2af8e15d3177a43e7b65 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.10 (GNU/Linux) - -iEYEARECAAYFAknwvowACgkQkKaRLQcq0GLLcgCgjBEpIcOmZKp3jeC2p9ixvKfa -obcAnjddbrawMtum9Dusq+Q/KDBT5JoV -=GHCC ------END PGP SIGNATURE----- diff --git a/sci-biology/bowtie/bowtie-0.9.9.2.ebuild b/sci-biology/bowtie/bowtie-0.9.9.2.ebuild new file mode 100644 index 000000000000..cf7feed786d4 --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.9.9.2.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.9.9.2.ebuild,v 1.1 2009/05/02 23:48:39 weaver Exp $ + +EAPI="2" + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) + +src_prepare() { + sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die +} + +src_install() { + dobin bowtie bowtie-* || die + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} |