sci-biology/cufflinks: Add upper limit for boost dep as forced by upstream, #535716

Package-Manager: portage-2.2.15/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

5 files changed, 34 insertions, 27 deletions

diff --git a/sci-biology/cufflinks/ChangeLog b/sci-biology/cufflinks/ChangeLog
index 044b1c730a93..4fadb5eb84d4 100644
--- a/sci-biology/cufflinks/ChangeLog
+++ b/sci-biology/cufflinks/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/cufflinks
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.9 2014/10/02 08:01:05 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.10 2015/01/08 07:35:53 jlec Exp $
+
+  08 Jan 2015; Justin Lecher <jlec@gentoo.org> cufflinks-1.3.0-r1.ebuild,
+  cufflinks-2.2.1.ebuild, cufflinks-2.2.1-r1.ebuild:
+  Add upper limit for boost dep as forced by upstream, #535716
 
 *cufflinks-2.2.1-r1 (02 Oct 2014)
 
diff --git a/sci-biology/cufflinks/Manifest b/sci-biology/cufflinks/Manifest
index bc30e466a804..e7e9dca05dfc 100644
--- a/sci-biology/cufflinks/Manifest
+++ b/sci-biology/cufflinks/Manifest
@@ -8,27 +8,27 @@ AUX cufflinks-2.2.1-flags.patch 1132 SHA256 3f86cd6ef757bc597bf4a511c119f176d4bb
 AUX cufflinks-2.2.1-hts.patch 422 SHA256 b04b813da21060c5598b48daf95f42a02b92134935912fe10bb61e396aa66426 SHA512 666eff4c5b40916d8b5c6581b0946f2e5dfaf5e1b816b28aaf5f037e5eab78297058699f686108f0dcc4e9aef2e2e6fdbaf05b9c546b11a3e68e7cbae88d6de7 WHIRLPOOL 330fbcf9e879740b951cbb41d2fcb6ac68e02549b33a4f8e0e84956b8b2ced10659a287cab82e1eac6a2b8e3e1496322ab25c6a452a27483d028d351af4730a3
 DIST cufflinks-1.3.0.tar.gz 676660 SHA256 c1e194e30e6ba2e1cbbd35e5f92be59f9fdef95a12079b3141790efbbdbdfd86 SHA512 b493c06b00093958aa3bf4aefa6435b89aa3fa8f90b9adea955b38aaa0301fafe3f028321573855d2af9515f9792a8a9c3851bd9352846131658e54b5a6ac68a WHIRLPOOL 649ed7638bdc655cc38d9c0ec6c81bc464e648e6e684e31af955a424510ee4702e2cec8e3dbfa2d97859ed27e04ff45fe2e07cb0a548c87674337bb94f5352ce
 DIST cufflinks-2.2.1.tar.gz 766280 SHA256 e8316b66177914f14b3a0c317e436d386a46c4c212ca1b2326f89f8a2e08d5ae SHA512 4da7f3a6090ea8cf469a85208c91073abdcd8b0e71c51b0f7052ce8001c368055b9d9cb7726d463196f5b3ab0b4a49bf5241d321ac3fe061225ecc47b4ca209b WHIRLPOOL bd40e6612f3c16466cf14efe706e38663c61d01661f901d9fdb140d0419e47e2ff10515dc7a0ff81da081e87af6d5d393d88cc4d036e8b921491fb5a790ae224
-EBUILD cufflinks-1.3.0-r1.ebuild 978 SHA256 7080262396c6df8b2e47f811e2f70fca41853367206504e9f3f3941ed412637b SHA512 a8b0778e29ba43694045cb6b4cb74d976b070eb15c10ae7ad8933e82b31e53b2aa096cb0f70d1b34658bfb5b59894ad24ae3446a5a879c40781121d00ef8a43a WHIRLPOOL e7e10b72bc8dc6d064cc87c019bf0ba27f1b24bd3f6b6e0fb43501f72edb218e28db814c43bf10bd70889350b81d64a34d32aa9e6d0af86dc01cd97eee2a5691
-EBUILD cufflinks-2.2.1-r1.ebuild 1137 SHA256 27ead30ca1a68f7bb769dfbd8bba8757c1132d4e2b2bc8a8fd8b742a4db47301 SHA512 6b5bb225a88c579c1f9ece0753e9426fb61e9a30b42d89a48647540b694db87459e0a71f2de361746205c1f23c6d8e3004fd54903f768aeed64a3eb1a8358334 WHIRLPOOL f6bed64b4613b0bad124d7931d18413557686339b1e5b974f9e9a5f5bbe1448c632c3257b4fad0f5a6d8e23230542ebe12aa0b1360ee93879a66aa90295b5d5a
-EBUILD cufflinks-2.2.1.ebuild 993 SHA256 384f5f2f2093511226c4ca3413ac6efca8dc8857d7c78a04d2645f2f000003a7 SHA512 d083a5eb12110a05c12de47abeff82436ce2e22269df0926fbfade60d2cf65fa22399655d05fe25b06d8eef42ce5e82bf2fb1b82631adb224fcd97f6c2d327f7 WHIRLPOOL 069b81f8bc333980b0850463171bdf5aab6c4dbd45fb50a3ae1fd4e0a6359c03bfbf3378141e83d6eaeeeadc1517b0c5d7649b307142c890bd3fdfd7a010be3f
-MISC ChangeLog 1836 SHA256 4fd424df0395f584024fa8fb2bf37a58d4987f1454ee00e720c2d67eda363aa3 SHA512 30283966a3c1363005c4dfae804a7971810535e688911517ddc73c087bd6c99218c5de3b3e90e5d4e84f8b169d2cec0d9591a469405b6544f8e5a2d1f04bb2c2 WHIRLPOOL 33d8c91f3fe40b1b28bc6d42d5622cca554c399eb2efb875edf09410f6e81050d974eb7b72c49a1bd75c6483e80e9d9955fedf811c5abf5ecd922addfa8715ad
+EBUILD cufflinks-1.3.0-r1.ebuild 984 SHA256 25c75628ae1fe3dff59e99b2ec868022dc563fb1b624037b0b50daa46ea2a102 SHA512 d5c0a353bc3049fe7bcd583e6e47f1620996ff09aa22e51a4bcb44fdb5d9bd632b673d373270fe9c22301b901a9f50cf108a006467f2a8e973e02d44ca77fac6 WHIRLPOOL 24912ef51f89ec90f853484824c74eb941d4a4bbdc92b71cfafb97e818c386684b0c20b4bc99af48ec441658b7d764867cfd8892ec93031c18e451e43eff9474
+EBUILD cufflinks-2.2.1-r1.ebuild 1195 SHA256 0b5966655e213b7ee354c9ae3ac57090c5870606f9d78cd21bad5d65ab8abb01 SHA512 86d2feb805ee1e0f944edd6f96da14f6c4ab0b215639e0ccd1898a6fe7710d05cdeba5e55368a99bef494866a289f05d187f972dd934d7abe7412f0dbb8e85b6 WHIRLPOOL 5d825db868a56791897be2f50d2168de50e7ef692a612c33eaa4ce4f261c71c86b61e68b2264c6eee3ae79f5b0749a929efbaae7770b80247735394acd1bf643
+EBUILD cufflinks-2.2.1.ebuild 1019 SHA256 e881101a668b5fe72d5bd24cdca1a33c67076567173cdeb377207753a7dc2768 SHA512 5b66475de50c242128a193ffbaf23936cdc7a36701e8920552b590f5f186166fb496a556985f0f5e412ca40750265a5dfe8650670d0f86a7440f7aa82cc053af WHIRLPOOL 58870c18b67cde5b1fb463ed4ff78ce952426b59f4feee7853db4962820ac02b51fc45abbfea8f6869a79ca6d59cbeb5d109f9376e0196fab3fb9b529c2e2167
+MISC ChangeLog 2028 SHA256 6a3c710dd915827d77987549640ebb63d429b13e61941530ec5c2fff91aa2def SHA512 4a08cbb5b18985c626fcb582eeef2af3f330b8afc01464f3377d3134e9832dac72ba3a8b5b61c87a228f58067b9870624db86f67e222bf4e0002c89c3818032a WHIRLPOOL 451238f0ba312dc567715d7dcb12fa676374a970f37f5ea4512b3ef9281dc2f14b0b6ab29759198182545fbfad35be5179b11fe608e79a459c57ae2f7b7db19a
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild b/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild
index 4421d989877a..01d9e6780489 100644
--- a/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild
+++ b/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild,v 1.2 2014/09/25 15:21:35 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild,v 1.3 2015/01/08 07:35:53 jlec Exp $
 
 EAPI=5
 
@@ -20,7 +20,7 @@ KEYWORDS="~amd64 ~x86"
 DEPEND="
 	>=sci-biology/samtools-0.1.18
 	<sci-biology/samtools-1
-	dev-libs/boost:="
+	<dev-libs/boost-1.56:="
 RDEPEND="${DEPEND}"
 
 PATCHES=(
diff --git a/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild b/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild
index e6e79a3c9df0..836a94933453 100644
--- a/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild
+++ b/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild,v 1.1 2014/10/02 08:01:05 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild,v 1.2 2015/01/08 07:35:53 jlec Exp $
 
 EAPI=5
 
@@ -26,6 +26,7 @@ DEPEND="
 		<sci-biology/samtools-1
 		)
 	>=dev-libs/boost-1.47.0:=
+	<dev-libs/boost-1.56.0:=
 	dev-cpp/eigen:3
 "
 RDEPEND="${DEPEND}"
@@ -33,6 +34,7 @@ RDEPEND="${DEPEND}"
 PATCHES=(
 	"${FILESDIR}"/${P}-hts.patch
 	"${FILESDIR}"/${P}-flags.patch
+	"${FILESDIR}"/${P}-boost.patch
 	)
 
 src_prepare() {
diff --git a/sci-biology/cufflinks/cufflinks-2.2.1.ebuild b/sci-biology/cufflinks/cufflinks-2.2.1.ebuild
index 2c59840e5e83..e880b83ec2e3 100644
--- a/sci-biology/cufflinks/cufflinks-2.2.1.ebuild
+++ b/sci-biology/cufflinks/cufflinks-2.2.1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1.ebuild,v 1.1 2014/09/25 16:11:26 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1.ebuild,v 1.2 2015/01/08 07:35:53 jlec Exp $
 
 EAPI=5
 
@@ -19,6 +19,7 @@ DEPEND="
 	>=sci-biology/samtools-0.1.18
 	<sci-biology/samtools-1
 	>=dev-libs/boost-1.47.0:=
+	<dev-libs/boost-1.56.0:=
 	dev-cpp/eigen:3
 "
 RDEPEND="${DEPEND}"