Initial import.

Package-Manager: portage-2.1.1_pre3-r3

5 files changed, 78 insertions, 0 deletions

diff --git a/sci-biology/stride/ChangeLog b/sci-biology/stride/ChangeLog
new file mode 100644
index 000000000000..b36a08704013
--- /dev/null
+++ b/sci-biology/stride/ChangeLog
@@ -0,0 +1,12 @@
+# ChangeLog for sci-biology/stride
+# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/stride/ChangeLog,v 1.1 2006/07/23 17:37:07 markusle Exp $
+
+*stride-20011129 (23 Jul 2006)
+
+  23 Jul 2006; Markus Dittrich <markusle@gentoo.org> +metadata.xml,
+  +stride-20011129.ebuild:
+  Initial import. Many thanks go the the author Dmitrij Frishman
+  <d.frishman@wzw.tum.de> for allowing us to distribute the source
+  and for an updated version of the code.
+
diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest
new file mode 100644
index 000000000000..f8b42fc14394
--- /dev/null
+++ b/sci-biology/stride/Manifest
@@ -0,0 +1,17 @@
+DIST stride-20060723-update.patch.bz2 5621 RMD160 c5ac88dcff4d074adb18fb09cc39f37e6b95d82a SHA1 a57e7780d2dd44ce53e72dac35ed4d8539a83d10 SHA256 8d48627c294b4efba67acba10fba47b20c0a8d5f7e06c2775a2d7eaaa0aa7b81
+DIST stride.tar.gz 56441 RMD160 6fdcf064f37ce44529446a043b56663af9765054 SHA1 f85cca717c79200bf33fa3a80323ccd9da471669 SHA256 d272700bccd046199f6ea1faed31a2a2662a7d5f13b7663736a1818ac18c87b9
+EBUILD stride-20011129.ebuild 985 RMD160 dd32b46f94190b9a00c0f10cac74b0c9168f3584 SHA1 95cb46c5a57037b17cac6a887505948a24604d28 SHA256 38b71c591c1e97c0a0dda167bdbfae6d8d42c0cb5c246530d7887a5dbd3a22e0
+MD5 5fe63646b16640302ef768b70dded6fd stride-20011129.ebuild 985
+RMD160 dd32b46f94190b9a00c0f10cac74b0c9168f3584 stride-20011129.ebuild 985
+SHA256 38b71c591c1e97c0a0dda167bdbfae6d8d42c0cb5c246530d7887a5dbd3a22e0 stride-20011129.ebuild 985
+MISC ChangeLog 513 RMD160 a0cbcd8e466c9d47be7436e9120a2653ef6cc571 SHA1 86c82499efacf29d377018286aa6980989c8202f SHA256 113f0ad92f1e3a7eea952050d2c248fe4bad13099f5ff50d6c7fa39e546569ce
+MD5 04559f4efdd91feaf2a96378a8efff83 ChangeLog 513
+RMD160 a0cbcd8e466c9d47be7436e9120a2653ef6cc571 ChangeLog 513
+SHA256 113f0ad92f1e3a7eea952050d2c248fe4bad13099f5ff50d6c7fa39e546569ce ChangeLog 513
+MISC metadata.xml 254 RMD160 991c43f74018cbcaaa60b41290c912a8b61091c8 SHA1 83928b80dc644941d59b64e04e0964b1c1fa3005 SHA256 80784c7acbd54102b4d3fc01c3fb2ae5862732093798671596c67a8350c25454
+MD5 041650a939ada57b9df1755a488ad1b7 metadata.xml 254
+RMD160 991c43f74018cbcaaa60b41290c912a8b61091c8 metadata.xml 254
+SHA256 80784c7acbd54102b4d3fc01c3fb2ae5862732093798671596c67a8350c25454 metadata.xml 254
+MD5 e1831d42da1d317d6054a493e90edee7 files/digest-stride-20011129 488
+RMD160 8d65133583cc451d2f69eabe97c2c2dd011dca29 files/digest-stride-20011129 488
+SHA256 e46f62b283d702bb7f3b7e3c129f4b6e1ccf7dd4c3e376fc90b4256de8af35dd files/digest-stride-20011129 488
diff --git a/sci-biology/stride/files/digest-stride-20011129 b/sci-biology/stride/files/digest-stride-20011129
new file mode 100644
index 000000000000..4bb61f883a77
--- /dev/null
+++ b/sci-biology/stride/files/digest-stride-20011129
@@ -0,0 +1,6 @@
+MD5 679bcb7f8db21c9d8a8d24220c6d6d35 stride-20060723-update.patch.bz2 5621
+RMD160 c5ac88dcff4d074adb18fb09cc39f37e6b95d82a stride-20060723-update.patch.bz2 5621
+SHA256 8d48627c294b4efba67acba10fba47b20c0a8d5f7e06c2775a2d7eaaa0aa7b81 stride-20060723-update.patch.bz2 5621
+MD5 bdef3a3e1af8cbdf8fbfefacfa9a929f stride.tar.gz 56441
+RMD160 6fdcf064f37ce44529446a043b56663af9765054 stride.tar.gz 56441
+SHA256 d272700bccd046199f6ea1faed31a2a2662a7d5f13b7663736a1818ac18c87b9 stride.tar.gz 56441
diff --git a/sci-biology/stride/metadata.xml b/sci-biology/stride/metadata.xml
new file mode 100644
index 000000000000..a3ced4f52edf
--- /dev/null
+++ b/sci-biology/stride/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>markusle@gentoo.org</email>
+		<name>Markus Dittrich</name>
+	</maintainer>
+	<herd>sci</herd>
+</pkgmetadata>
diff --git a/sci-biology/stride/stride-20011129.ebuild b/sci-biology/stride/stride-20011129.ebuild
new file mode 100644
index 000000000000..73cc2fa79a7f
--- /dev/null
+++ b/sci-biology/stride/stride-20011129.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/stride/stride-20011129.ebuild,v 1.1 2006/07/23 17:37:07 markusle Exp $
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="A programm for protein secondary structure assignment from atomic coordinates."
+LICENSE="as-is"
+HOMEPAGE="http://binfo.bio.wzw.tum.de/groups/frishman/software"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz
+	mirror://gentoo/${PN}-20060723-update.patch.bz2"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+S="${WORKDIR}"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+
+	# this patch updates the source to the most recent
+	# version which was kindly provided by the author
+	epatch "${DISTDIR}/${PN}-20060723-update.patch.bz2"
+
+	# fix makefile
+	sed -e "/^CC/s/gcc -g/$(tc-getCC) ${CFLAGS}/" -i Makefile || \
+		die "Failed to fix Makefile"
+}
+
+src_install() {
+	dobin ${PN} || die "Failed to install stride binary"
+}