New package, ebuild written by me

Package-Manager: portage-2.2_rc30/cvs/Linux x86_64

4 files changed, 63 insertions, 0 deletions

diff --git a/sci-biology/velvet/ChangeLog b/sci-biology/velvet/ChangeLog
new file mode 100644
index 000000000000..705ee8914c49
--- /dev/null
+++ b/sci-biology/velvet/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/velvet
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.1 2009/06/05 10:06:43 weaver Exp $
+
+*velvet-0.7.31 (05 Jun 2009)
+
+  05 Jun 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+  +velvet-0.7.31.ebuild:
+  New package, ebuild written by me
+
diff --git a/sci-biology/velvet/Manifest b/sci-biology/velvet/Manifest
new file mode 100644
index 000000000000..3edf3221c791
--- /dev/null
+++ b/sci-biology/velvet/Manifest
@@ -0,0 +1,4 @@
+DIST velvet_0.7.31.tgz 3423497 RMD160 f0d7b0c67e500417f8ecb8dd456fa5213f34d14b SHA1 f5693eefd0e9b6aace3edb9c2c9139d10d3c8449 SHA256 a1f3e20090e630aeaf76622680d1f1df53d0824dc20c7120976c53f889038430
+EBUILD velvet-0.7.31.ebuild 1064 RMD160 01079600826ecda926519a44f6f86e484e56e9b6 SHA1 d3784dd2fd7165cad98d639affdbefc283b4fb1b SHA256 05e679ba5d768304b365d41640005c986baf2fc83655cedf0332691728380293
+MISC ChangeLog 366 RMD160 7f0730307e94cda8f11c48043a3688bceb1dbc14 SHA1 227a0ab536f7174a060cf3eecf82bf707b905a4a SHA256 58de4750d435d790a00b811d646868c9f6fac1a7031d61a409a5c4a0aa6acefb
+MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/velvet/metadata.xml b/sci-biology/velvet/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/velvet/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/velvet/velvet-0.7.31.ebuild b/sci-biology/velvet/velvet-0.7.31.ebuild
new file mode 100644
index 000000000000..71e80531fd29
--- /dev/null
+++ b/sci-biology/velvet/velvet-0.7.31.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.31.ebuild,v 1.1 2009/06/05 10:06:43 weaver Exp $
+
+EAPI="2"
+
+MY_P="${PN}_${PV}"
+
+DESCRIPTION="A sequence assembler for very short reads"
+HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
+SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	rm -rf "${S}"/third-party/zlib*
+	sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
+		-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
+		-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
+		"${S}"/Makefile || die
+	sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
+}
+
+src_compile() {
+	emake -j1 || die
+	emake -j1 color || die
+}
+
+src_install() {
+	dobin velvet{g,h,g_de,h_de} third-party/layout/graph2.py third-party/afg_handling/*.pl || die
+	dodoc Manual.pdf CREDITS.txt
+}