Added 149 to x86. New version.

Package-Manager: portage-2.0.51.22-r3

5 files changed, 60 insertions, 5 deletions

diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog
index 8025a57c26c9..5115a4da618d 100644
--- a/sci-biology/cutg/ChangeLog
+++ b/sci-biology/cutg/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/cutg
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.31 2005/11/19 18:22:06 blubb Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.32 2005/12/13 20:00:17 ribosome Exp $
+
+*cutg-150 (13 Dec 2005)
+
+  13 Dec 2005; Olivier Fisette <ribosome@gentoo.org> cutg-149.ebuild,
+  +cutg-150.ebuild:
+  Added 149 to x86. New version.
 
   19 Nov 2005; Simon Stelling <blubb@gentoo.org> cutg-148.ebuild:
   stable on amd64
diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest
index 00a38707d6ea..86e2007a61be 100644
--- a/sci-biology/cutg/Manifest
+++ b/sci-biology/cutg/Manifest
@@ -1,6 +1,8 @@
-MD5 eff06471af00f78c207e5bae541a8549 ChangeLog 4362
+MD5 d090983d7fdb397ee87ccf79c516b431 cutg-150.ebuild 1306
 MD5 65c2bce45a1bf7a207f99d26fab7d967 cutg-148.ebuild 1283
+MD5 989a022cc69b4de67910361aa5c0955d ChangeLog 4514
+MD5 1e8ebd4998bc18ae9116e309b06b4388 cutg-149.ebuild 1305
 MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594
-MD5 4f38680a89dd8100280f5cc05532735d cutg-149.ebuild 1306
 MD5 8fe4ad8cd05d6466bcf6c253c5a18ba4 files/digest-cutg-148 63
 MD5 b9c7c9eeb0844e79c1733a36314cabcb files/digest-cutg-149 63
+MD5 1297dd4cd107330a01778650103a4ad1 files/digest-cutg-150 63
diff --git a/sci-biology/cutg/cutg-149.ebuild b/sci-biology/cutg/cutg-149.ebuild
index c0a9e9c6f8db..6499c87eb089 100644
--- a/sci-biology/cutg/cutg-149.ebuild
+++ b/sci-biology/cutg/cutg-149.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2005 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-149.ebuild,v 1.1 2005/10/18 00:19:37 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-149.ebuild,v 1.2 2005/12/13 20:00:17 ribosome Exp $
 
 DESCRIPTION="Codon usage tables calculated from GenBank"
 LICENSE="public-domain"
@@ -11,7 +11,7 @@ SLOT="0"
 # Minimal build keeps only the indexed files (if applicable) and the
 # documentation. The non-indexed database is not installed.
 IUSE="emboss minimal"
-KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~x86"
+KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 x86"
 
 DEPEND="emboss? ( sci-biology/emboss )"
 
diff --git a/sci-biology/cutg/cutg-150.ebuild b/sci-biology/cutg/cutg-150.ebuild
new file mode 100644
index 000000000000..fbb64869f4bf
--- /dev/null
+++ b/sci-biology/cutg/cutg-150.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-150.ebuild,v 1.1 2005/12/13 20:00:17 ribosome Exp $
+
+DESCRIPTION="Codon usage tables calculated from GenBank"
+LICENSE="public-domain"
+HOMEPAGE="http://www.kazusa.or.jp/codon/"
+SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~x86"
+
+DEPEND="emboss? ( sci-biology/emboss )"
+
+S="${WORKDIR}"
+
+src_compile() {
+	if use emboss; then
+		mkdir CODONS
+		echo
+		einfo "Indexing CUTG for usage with EMBOSS."
+		EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
+			"Indexing CUTG failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		mkdir -p "${D}"usr/share/${PN}
+		mv *.codon *.spsum "${D}"/usr/share/${PN} || die \
+			"Installing raw CUTG database failed."
+	fi
+	dodoc README
+	if use emboss; then
+		mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS
+		cd CODONS
+		for file in *; do
+			mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \
+				"Installing the EMBOSS-indexed database failed."
+		done
+	fi
+}
diff --git a/sci-biology/cutg/files/digest-cutg-150 b/sci-biology/cutg/files/digest-cutg-150
new file mode 100644
index 000000000000..bf32c35a37bd
--- /dev/null
+++ b/sci-biology/cutg/files/digest-cutg-150
@@ -0,0 +1 @@
+MD5 ceef4467329b766f66039c93484c741c CUTG.150.tar.gz 158138458