diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-02-05 03:56:55 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-02-05 03:56:55 +0000 |
| commit | f915dce1a70daf0c6a26e7f6f8ffe06a3834ed96 (patch) | |
| tree | 681ab64d5da087ce967a32ad6d35e7889aefe554 /sci-biology | |
| parent | Drop duplicate multilib (oops). (diff) | |
| download | historical-f915dce1a70daf0c6a26e7f6f8ffe06a3834ed96.tar.gz historical-f915dce1a70daf0c6a26e7f6f8ffe06a3834ed96.tar.bz2 historical-f915dce1a70daf0c6a26e7f6f8ffe06a3834ed96.zip | |
New package, ebuild written by me
Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/cufflinks/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/cufflinks/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/cufflinks/cufflinks-1.3.0.ebuild | 37 | ||||
| -rw-r--r-- | sci-biology/cufflinks/metadata.xml | 9 |
4 files changed, 70 insertions, 0 deletions
diff --git a/sci-biology/cufflinks/ChangeLog b/sci-biology/cufflinks/ChangeLog new file mode 100644 index 000000000000..cb1ed076a7d6 --- /dev/null +++ b/sci-biology/cufflinks/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/cufflinks +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.1 2012/02/05 03:56:55 weaver Exp $ + +*cufflinks-1.3.0 (05 Feb 2012) + + 05 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +cufflinks-1.3.0.ebuild, + +metadata.xml: + New package, ebuild written by me + diff --git a/sci-biology/cufflinks/Manifest b/sci-biology/cufflinks/Manifest new file mode 100644 index 000000000000..2e80248664e5 --- /dev/null +++ b/sci-biology/cufflinks/Manifest @@ -0,0 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +DIST cufflinks-1.3.0.tar.gz 676660 RMD160 b497d7cfc12453024ac02da24a9eef8987ab3cab SHA1 fa93a7a33f0649793ec1d185cb7043fd0dc2018b SHA256 c1e194e30e6ba2e1cbbd35e5f92be59f9fdef95a12079b3141790efbbdbdfd86 +EBUILD cufflinks-1.3.0.ebuild 874 RMD160 af35ea133a8b203065382d79843d8c3c7f69b04e SHA1 29df639a0d690c90e09949b3fae010c0afd6867e SHA256 6c73264ac426b6be229eca98e065b88ac77d08aa347926f95caf4f328c5e8159 +MISC ChangeLog 376 RMD160 11c79bda4caead2c5705c25c374444b1c0d167e9 SHA1 fd1aee2264160b910c7a413d5774808331095950 SHA256 1ce4c48a4f296a16ba5aabb20006171377f6d2d82ec961f5e066d1f261576ae2 +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v1.4.11 (GNU/Linux) + +iEYEARECAAYFAk8t/g0ACgkQ8xSwyhbn2Obf9gCfck6jOnxgMaFYHzkPopVz0rpO +lDoAnA3eLcSCWY2H+vU6yq4KTI70rZfB +=rB2q +-----END PGP SIGNATURE----- diff --git a/sci-biology/cufflinks/cufflinks-1.3.0.ebuild b/sci-biology/cufflinks/cufflinks-1.3.0.ebuild new file mode 100644 index 000000000000..022929e39c30 --- /dev/null +++ b/sci-biology/cufflinks/cufflinks-1.3.0.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0.ebuild,v 1.1 2012/02/05 03:56:55 weaver Exp $ + +EAPI=4 + +inherit flag-o-matic autotools + +DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" +HOMEPAGE="http://cufflinks.cbcb.umd.edu/" +SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="sci-biology/samtools + dev-libs/boost:1.46" +RDEPEND="${DEPEND}" + +MAKEOPTS="${MAKEOPTS} -j1" + +src_prepare() { + filter-ldflags -Wl,--as-needed + eautoreconf +} + +src_configure() { + econf \ + --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/boost-1_46" || die +} + +src_install() { + emake DESTDIR="${D}" install || die + dodoc README AUTHORS +} diff --git a/sci-biology/cufflinks/metadata.xml b/sci-biology/cufflinks/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/cufflinks/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |