Todays python patches; drop LD_LIBRARY_PATH from launcher

Package-Manager: portage-2.2.17/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

12 files changed, 200 insertions, 34 deletions

diff --git a/sci-chemistry/ccpn/ChangeLog b/sci-chemistry/ccpn/ChangeLog
index 0f8ef90ec58d..9f4aaea176e0 100644
--- a/sci-chemistry/ccpn/ChangeLog
+++ b/sci-chemistry/ccpn/ChangeLog
@@ -1,6 +1,14 @@
 # ChangeLog for sci-chemistry/ccpn
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.161 2015/02/24 16:30:04 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.162 2015/02/26 07:50:22 jlec Exp $
+
+*ccpn-2.4.1_p150226 (26 Feb 2015)
+
+  26 Feb 2015; Justin Lecher <jlec@gentoo.org> +ccpn-2.4.1_p150226.ebuild,
+  files/analysis, files/dangle, files/dataShifter, files/depositionFileImporter,
+  files/eci, files/extendNmr, files/formatConverter, files/pipe2azara,
+  files/xeasy2azara:
+  Todays python patches; drop LD_LIBRARY_PATH from launcher
 
 *ccpn-2.4.1_p150224 (24 Feb 2015)
 
diff --git a/sci-chemistry/ccpn/Manifest b/sci-chemistry/ccpn/Manifest
index e4b6fd24d12d..da29e56a2b13 100644
--- a/sci-chemistry/ccpn/Manifest
+++ b/sci-chemistry/ccpn/Manifest
@@ -2,46 +2,48 @@
 Hash: SHA512
 
 AUX 2.3.1-parallel.patch 850 SHA256 38f796a18c75b2ffb1168d22d1e1453faa480e4c8b0e3d75db2b0603ac4d6788 SHA512 0597e21c03baa27e2342249814fc0700b73cf2800173468574ef704d48f7e6e042ac6ae552bbb9e27fd4baca36cfaf60a1eac9813354916b3e8295a35b64dcdf WHIRLPOOL 7fec03d065add264de91aa07c211003e2471e77035f36c497c325c4319e999d83c06ef6f496ebab966d0877c89101e26ec7ce86ea8b740973c0254ad118e3e26
-AUX analysis 319 SHA256 0731b9a1624259b373c7163c6ad095c82f77965f0b61880e84bc8e3c30b83d6e SHA512 68f5f0973682ba0e32f400e5d9bb04edac895552f3bfcdbca3f2ac74ce1de49ab59dd88b6fcd9fd4e2c085fe2c0b4843a8f20556d05bfc8aa9c1bb6ca0fe46df WHIRLPOOL e262996c20d72976414a013d4a956c469c139b7bfffa9b2ee5772280853644be7fc61fd0a455915c2f2d367c63ec31fda50e62b2e5abdafec34f51d936b9cf69
-AUX dangle 315 SHA256 03101ba39fc9fef1380315c2c64f9d027fb95b79d82c35b9971445613ad5774d SHA512 4e5d254df831bad683770dbf8d0845ea64fe781c3f5f14301ded6dd4efcf3bef06327bd83f5f38d1b9cd2e1d04318cafbb6185d607617357df2256ef38cca1ad WHIRLPOOL 933787db14c1f3b98ceb347b991769f196bf8c34b87acdf73ba72c59c6aad2ce6a6926e153eeae0f86af60013a85632a7d54403979452729bd31cc8d44b55248
-AUX dataShifter 318 SHA256 891f87e2eaae88253ffddd4e71b060f8b8e7711d54a02492117500186f04f45d SHA512 63d4f12afabd94c7a11f930d13eb27e5c1273057cfecfd2350833782a0089e84977a086fed6ea2adbe704a55d1f5bbe3a5497d2b8ea6ec9dc1228067e7119034 WHIRLPOOL 7849869b0e761884ee8ac462acd666858244044c4866ab1db4d32287e8f7f342d4ef21d9307da7e2990da8f1c5cbf696fb59c3980a32ae4e3cfbd33b8d8a0f01
-AUX depositionFileImporter 322 SHA256 ba96561ccef577126df3454b0ef2207e6fe32ecb178e98bc0e106423553e0f33 SHA512 f45f155da7d92fdfc99c69afa9dff687ff68dd6717dd16561555ed08fc695ba07e3ddda08011d3ec031bbcf06eb14fcc2bf8e5dce05591193871afe120ee90b5 WHIRLPOOL 1a42c6e536fedab84a005001e046a3f98b9b2dad304ca1de2bfd615f4f4cd90d1cca22eaeb239913bbfc06ce2aaca10cfc00ed6864147127a980b2cbbc539882
-AUX eci 303 SHA256 e54ccd50ae69d94ba3f72c347b974e1b878bd63e28fd4c43a6b095e187daf791 SHA512 4970707cf7d823aebe80c660710589fced0b9189a08f02c0be48b67102ae0c68cd476dbcdfeb2bb029c3b426485c69fe66ef97cd5170de3c0d3610c85f407e35 WHIRLPOOL 4a32fa2f511353553fac887d1df2952901bd76ed5df721c3103100245f99139f507b0cb7169131a965c0c22afcde5b017603549d136b54186ee4ee6bfd79b085
-AUX extendNmr 302 SHA256 4c483a09abf5fa3043a51dda55e7f528faecbf56769a3306f397b3848137cee6 SHA512 c8209a6c9a4791440c80e57b9a495667f53eb4599018b58f6016ff0d1dd91d45dc2e45f283d30e6b571cbca81ea84c3eea8f2583039c93021f465bdf7b8c1d10 WHIRLPOOL 65082f381ebda803d348caec18ed33ea49996e82bd6431e1aabb0632992c059c8acf9a4330f61c222041dd75096c6463dba3507a9022c49a8b95bd11d9925784
-AUX formatConverter 322 SHA256 86b2613d7842ee3777fd98889abe6450266140d6fe6ed7d071db6b549c2afb65 SHA512 aa27df8af876130fb485f348fac86fb324df74cb0f3f210aa722291e5acb7267097963228f0946674d86f439f8ea90d7aed3b280757e02752d594e093d35a5f4 WHIRLPOOL 0c57a44ce935606846d877026c4471bea342a4a2a2ea667cc227d6048e476c476a5539ad3c3cfb861bfb5d47e2021a582813d1bf46d5fa2a220347d9745e052a
-AUX pipe2azara 326 SHA256 8b17d8c11dcbfeac21da3ad927e2e8de73509d21e9250c328fbea1aba658611c SHA512 7800e97886e172b9891b6221f1b38889c216a548eb38984b8806b15f006296ab561ef514f65259cbc5f9acd48bc7e2db6330952f4e92d8c16e41b36b396f109f WHIRLPOOL 7a61785e73e3e09f38a0d7a2a88246672116775db2cb8117359c9d665b25d3e2907f936f3527d15f3441ade5b026c1d0ed918547fef23408897f550c6b36237e
+AUX analysis 283 SHA256 f348aa9c9a5f7f380836b0dc62d8a1c053f69e60a441c7ae4abc45f9d8374a7b SHA512 f2dd8216021201b0f9307f8bb82033c3ebb1c9f21450ae206e59ad6442b0cf0f8fc6e4817d4347eb78a9528ba1ef60bd5395708067352d11330215e5ce2568ff WHIRLPOOL 52b60235b6a0421c985d06e28622b88106f9f24395dd9598e83d956f3c619d67248f7c71ac8c211167e06f0540a8aed16c2ce1f8369730c6fbb62269f7384fcd
+AUX dangle 279 SHA256 650da642809c8e65d7bed46465b557b4388c9b04556d860d8fbb07e35c960b7b SHA512 21fca09578aa13819a20f08ff414ca2b8d08d177a1ab09f8d85c53ae20fc6f38ab46e2933d72c239029b37ec5eebc3162f0c8e99f1ca1dd20aaa49277fac4e7d WHIRLPOOL f9b768f524a1c25e340e5738aef293140c39e49c8f287788fd8f6a2d921c9d72f3ab4333493cc4428d71b4942864801e23e46e1e72976c50e1325e58a257f9df
+AUX dataShifter 282 SHA256 f2db9793af0578e2f3e5ecf740b5178f303f5bb66bf7f307969018a0615e3a3f SHA512 f1c4a87d0d4d1a613ce8c9eacd9e3ba5047f1205404140c0c68a354bb790397b7ec49426660a48601a305906b60a8957d218dbc5ad1d6d48beb7030772a199b7 WHIRLPOOL fad840da2aca6805baedf61e4a24fdbaa3d011e0844f3b199feadaa2e6e86f65cf30349fb462f480fe54aa5ab4106a738f6051f83b2ff4c614053311c6bec19f
+AUX depositionFileImporter 286 SHA256 a22f158a85a3cbd546ffdb4c53cc60bd8d634296a86f552d69ec77cbf63e1289 SHA512 f7d7caa4b2b2d91eb5dc27ec0ccd6251dab94f6d8e318190b2f2b1b997f825d6cee1e3a38ee77f9358102dcdaf7d93c4d18c7250855446580abd459db31eec6d WHIRLPOOL 582dce9b6717ba6afbb9e6a5c917882ef6efd7dc05fe828a391e46274e1e095457e058a4ec016b105966cca8564afbf0c1eb77e0d313da3ebf2eab3db3dc54a0
+AUX eci 267 SHA256 1747e087c2c87f68fc7a9d2e42adb37048758377d60d0de0ea6a8ee2cb42a60b SHA512 800b2624fe21c706a1bc30bc8fd4fefb9f4c18cb795266cb8afcb3db09776600785a453eed656b4b25b34fc5e39a0e7a599bff2417bedbd0ac6945d2ad900080 WHIRLPOOL 3a04e6057743c672298a2e9ecc4a396131101b5699c8d8ca965c24fd3ac3db541a3b0b7a53ba87a91f5f3a1d2be7e8ef349013f3d9cb33f8addef05de6709693
+AUX extendNmr 266 SHA256 c13cd4d468e8b35d554f0b623e956f67fd5ac6131defa6535f3a3b810ef48920 SHA512 b94d480c776bc2da31ed12419df1c3364036299553697b7d50eb0ebf073126041e8acd3f1c30051dc1dbc44fef9662001e718a29b8c7fcfc2ca19c0da90125ce WHIRLPOOL 440e453390682bce4a6021d5d9119f985dd7b72cb7083852362228305d6860fd65e1e79c5a06c518677eb9b73d2530624ec5b6f4a7a4a690612f47cf02d665b8
+AUX formatConverter 286 SHA256 a7e501e118c52dbde7d7bf85b80520963e30b9e3babc202e4d2d0ff6a84406e6 SHA512 a987b73b10614a2616b62589004ae1e321903af08efea62f6c74f2cf5b1e7053454a382107056250824373bce9f281ad0af2e8f6928cdf2e556e9638646cfcda WHIRLPOOL 452eee87cc1a9c45c9fce54d3029e6464cb91795ea2ab9d1312661b856145f10956556f97ad13b2a1db649d1e62a5a77885b74a952057c0f81aa6d597dfcb222
+AUX pipe2azara 290 SHA256 d656e61005b0a5e49fdf835febac8ad334fa946fadf577072ed6999d7d8f3159 SHA512 6f90a1720dc786d84576029cf77271e8eeb0b5c38506e93227064aafba1152a86762125d3bb9f26a741dcc215da87cf96ba9b8926568db79b56159f8839e8a80 WHIRLPOOL 6eedb142d8433b9c85f3804105d69ac024981e263fdf552417741d31300cab2ae4fb4ac40a0770d75725775a77449c70d9ae5aba8f1742ebb45d2d95bba81bda
 AUX talosn.patch 1358 SHA256 55e4e412158b851f040ac25d93b8b1a42ffa6354c26327cb8803288621787518 SHA512 fb4b74d0b07b9edf47135bb5d965b485ee62fde8e33c3b4dffb09092063368de6ae54435fc82aca87d88dd9a71cb1abb96446241c7d433bd2b0b1801e3e5ed5b WHIRLPOOL 5ff7c76822d8de0545d235118d50b80c0c6321d6b11ce9f3f0d1f36ae0c68d9d5753fdc8f81ef95b46345085c5dd6a349fdc70ff7f22a7e195fcf26d4475211c
-AUX xeasy2azara 324 SHA256 89945dae1c7bd78aefdd19c81c79571a13aaa149d6c50e12cc0ecd075930ed4c SHA512 de31df36c259fa58483c6a0e24bfa6ece3a86db5d556c5c99f610c7c2ff659742fcf319ef387538cc5a74444bf4be8ffff96da7ee819ac583e2605f4f90a5806 WHIRLPOOL 6a40d21fa7cef520de86f04282b5e26e3a8809c7a8caed8e19a0758419039358e1b1f33a53f956bc77a10cddda703cce8f21584d8e9e3648fccca3a486ab9be8
+AUX xeasy2azara 288 SHA256 e116e19f3cb7bb10a75b75608ae6efb93dfb710e86fece357f3003913673f14a SHA512 e9a3dedc155f9f7b163eead73099532653454a7f5f12042348abf87a4e8930cb8b0b66fd87ef9fcc3b395c92d7e4942829ec8f5e7a1c28c7b3ce51022b8fce6b WHIRLPOOL e021756a059dfdf0f7dfdbac0f1740ec90a31d1b0f2b70d588d7574a0fe4f0607ecfc52b58a7e3f5140ff4e7fc4054f8fa11fa467aa41a2ad09ac99a24678979
 DIST analysis2.4.1.tar.gz 36088236 SHA256 1cb089dcc739e8536d938a68536f556094f5d728907b251fe337758ba5bef106 SHA512 db44468c360d51815614fe0055505001c0a7a722f980c2c049c00524672bdfd4a507134ce1d68b29ebf622ffe94e0c9bb9685fea5b3441790b997a64f78c0dc1 WHIRLPOOL b53fc0438a878a8f8ce0244f5c1ce9edb616665149a699364e3bcd38c5db548c22b80ef67b4183ad5321b71b69a3b85aecc7d912893bba947700003a411651ac
 DIST ccpn-update-2.4.1-150108.patch.xz 8364 SHA256 a2223d89dc279573871263093fedd9cca1a4ee3f29036d329c50448d6132c8f2 SHA512 32dcc3ff75db61cedeb2ef317b8a9bba1edeefedaeb8a0bd29735842c0b6f596aebe9a511f1ea447323786d092fc9930b3029d1c1a236c4c365a616841d79608 WHIRLPOOL 97ade62a3a8e735bc867e897478466524288929c8f20a19ac6a9bf6e8f524dc1010a8941e90ce51af3722e7775bebf78b5ed80b7a3b80318e83cd623bb8a6f9b
 DIST ccpn-update-2.4.1-150122.patch.xz 9032 SHA256 68c186762beb4600617f2dd71c14bacbc118311e0c9fc3c8ff53a22fc5caee05 SHA512 965ea204cee3ec54b7955c350769e497668fb2f134dbcc7c13d5169f49288e1855ed0824a9b4d8b39db990280145fe2e4f8de724eeddb2321db715e4a7565886 WHIRLPOOL f4c876a51cd4fb37f3dfd9a278f760c05bbf2a7f33c0e59d929d8c43ce931e4c6e177a05b084f9f7a57cc84895be071bf230c06c67fb7748d070e4f8db987b0d
 DIST ccpn-update-2.4.1-150202.patch.xz 9408 SHA256 75998daca8f25c212fcf50c122821949dda729102863e3c3c1cac66ce7bf02e3 SHA512 7d4e593d115e36a031178c13b0c1d237154091ee21ae0d35fae9246f2a0845f6ca2e81e7e0fab645355ac013fac3a0e46e9811916c55aa1c2239a640bc5c66f8 WHIRLPOOL 2b9134e31f137b823e10d3e93fc99bd217b6a5136f0c19c41e493eee58a30e5d4041699b6a13c858ac185f28ae9ccba25ff0ea935f577023b84ab00bfba90d66
 DIST ccpn-update-2.4.1-150223.patch.xz 10304 SHA256 3a045588005688466c13ca880de1ffb191ca8f8e277696d7420d6d19f375c9c5 SHA512 ac910a56f8221f1eefdc8d83b643aafb84a9e77169258e40c1e36b1bc95dba083f15488181d2ee34f22f341f989875825a77a318583537bd8fb4b0647a091421 WHIRLPOOL 05c02ba3ca614ec8dd586048a00c05fc66bf6fe2093f1bad2aa4ce69223fb498bc9640e72231765f86c5bb3f685e9b2c88dfe8a9afd9f43e130818ae62bb2aa8
 DIST ccpn-update-2.4.1-150224.patch.xz 10472 SHA256 8252e2e298b93c4cdf77cfb247d821a6ee3d95ee573fb03cd64e3c32a7bec9da SHA512 6905d352b8b12a6699de076e5bd8ce4c1efd561f4e062919550f8752ee1d9c304d57de18d13f810c71e12b236b70dc137d055efff6a2f2003c0bd42d4ca37540 WHIRLPOOL da5d69ee8ae9eca5536aa8a3cd5d01ba8c37cfb3b0cebbbd101d2bdeffef36399cb5454df51db62c4864051b1edb888bd8807c648564d736b0622adac699e8c4
+DIST ccpn-update-2.4.1-150226.patch.xz 10732 SHA256 74e8723d310d336cd4215ed4e9a1a1c0b2c0efdb4c03aaacba7ecd0575b38287 SHA512 60eb4acf6179f80207a72076ff5d5d733d3c3e804c1ce0a48701dd6e923146af49cd6759a529c8125f4b26eb3f8f83b35acc0c48b88a3e3034b25b5438a04feb WHIRLPOOL 3a2357d4fcb086206d45edd5b9cc807313b5f62be2f2a70e8f011f5521cf8729371b8c7149837c4ea1f6f059e26a49c1d20492f338a844e15f38ccf543faf6e1
 EBUILD ccpn-2.4.1.ebuild 4685 SHA256 6e4c496453063dee64e64975a5732f6bbbc820bb97dc460691187ad15dc3e935 SHA512 a862d7ea10818bf2f219411019db151255a1e09f8e72c7a37eacbe7220b8640958be43079e995828f055ae62e93d002540de5be8f0cff231bb5ec62dbb0e8a8e WHIRLPOOL 6ed8127f87305e1406aed474089a478423dc0ae6b3c81191d650de680d22aea2112c62ac63c02a76bf219bcad49451477682e3ad187999764bcb02fb105e1e58
 EBUILD ccpn-2.4.1_p150108.ebuild 4692 SHA256 cd8f2a9327714d07a88b714353299e078b6177444d746510e55dc7cb4c4b6e91 SHA512 94b835c77fec900191f3819934951938e864fa061e25c8a6e885af527947fd60510ec4dd8a65661996233d3de97fa0143803c7ba59508c79900676341e628721 WHIRLPOOL 638ec09624e702b0fc585a8eb63bf4070cd598e3b49032cfd4bd5f82219a77a16c832caec032f59b30e6ee1d4fbb41cbe7611a4d3b4e8c14f1f61a5942f79109
 EBUILD ccpn-2.4.1_p150122.ebuild 4692 SHA256 0c0b2c56576f3a3cc739daff25121339ba5f2f455e57ad76485246c30ba80399 SHA512 824858bba9edf362fee4154921230acba74362e2523a6fcb3807bcb61c37f3b21342433c8a9f4c2f2251f4ba3f472dae68da419f10fe018dedf61430cdd647b9 WHIRLPOOL abfa19b1bd70264997d8165dda26833c07a07b230c59c7e8305f209d4f5c20a78e4037ca89e12b3048f9ca7bde25b308d06e0e31db9d0ae3ed79bc4a1535bef0
 EBUILD ccpn-2.4.1_p150202.ebuild 4692 SHA256 d251bca04241d02f7235854d6756217e093370c7b5f11783fa1cc3c6e13d1593 SHA512 35a4f2b9c0825287b80997c338f3a393abbe9f6bb3eda067d530b02b58405ae1a0cb0bb9000f8667a5ee075e4b5fbbc56d6cc61406904d0102e513595c7525bc WHIRLPOOL 13f36b5c4954b530f0989969a27e2c662ecb08573fbccc7b6e2eb3f30f94b4badafde3049deab2e0166df8b5ffed24c705c54dc2a3fd1014718a217fb6505cba
 EBUILD ccpn-2.4.1_p150223.ebuild 4665 SHA256 9fdd0f3853099f79523ae3a02fb9b13cd00203fca252d2abfc81f078a2c48c71 SHA512 28d87e62296ef54ffc0e3f679295328810a59ed1263a078ef84969d0c8ffbde5bc99cd67dc576c4ee6b68d7b2a3c4387d8fe5de7bb1294638c008d451da09e20 WHIRLPOOL 4a7a66c93b5d0a91bbb59f9a0ae2ec028673b1c987822f41420cc570d804f2fb3285edd7a618415ff87013242414b101d9a6a140ab1f6841b0542503c772498c
 EBUILD ccpn-2.4.1_p150224.ebuild 4665 SHA256 0584408fe4b5c066ab1187f418668c082e489f075e5b866523ae6e8f0a63ff32 SHA512 14b742ca202a61502baa92952dde26213bc4cbb77b70f51a57f2c6565244a4895a5b9a04188bbc6a83f27e8b6bf437232e3007badef3d1fd6b38902b84048f9b WHIRLPOOL 6003edd41c833dc196d39537e0d8ff6bd4457c37e13d97e52793527d9eed500a89ac40d78a7320fc4c6ec8ba82728b919842eb03965c4921ce6832bb38686e1d
-MISC ChangeLog 30394 SHA256 3ba149c39eec9d4607381b147f8d7c9f4e7eb747b144624c6b3783985c90665d SHA512 3a3492b701da5154cb047fa3491c222761b02071f4e6bd49a8fd334dc94fc99b397d404a0e8fcfe76597efbd4d69239ea1d890052c7d0fba53597824a9515b13 WHIRLPOOL 2a9b162891a302be7a565676ef74839937493a171b7b43e395b45dc76faa4fac99ad9db3eade2b2d944b3c9655280394abeb9f3aacaef958ec1dc92fadc36b83
+EBUILD ccpn-2.4.1_p150226.ebuild 4665 SHA256 44cdb0520b2b85dc73cbdfc88f44a295248ac0e45cbdbb26903926ed402d6286 SHA512 10e2803cac416d7b0c72cb7eb00ca7feb6288b58a60b0380f6af10245fa50ca0f7ba73ce0217f5436e6f5a8d68e9e8b7f21eadb9090a25186b308bfc8f5a3b4c WHIRLPOOL 05c39ea06d48ef3e2d7dfcf1c494b4c96cd237c611b4df41bff0afa782af949d387aa63f0820f7f48186ad5243bde730b336d3658a17cb5622d67bba107c9d19
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diff --git a/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild b/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild
new file mode 100644
index 000000000000..f9b540e85161
--- /dev/null
+++ b/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild
@@ -0,0 +1,165 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild,v 1.1 2015/02/26 07:50:22 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+PYTHON_REQ_USE="ssl,tk"
+
+inherit eutils flag-o-matic multilib portability python-single-r1 toolchain-funcs versionator
+
+PATCHSET="${PV##*_p}"
+MY_PN="${PN}mr"
+MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
+MY_MAJOR="$(get_version_component_range 1-3)"
+
+DESCRIPTION="The Collaborative Computing Project for NMR"
+HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
+SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
+[[ -n ${PATCHSET} ]] \
+	&& SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+
+SLOT="0"
+LICENSE="|| ( CCPN LGPL-2.1 )"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+opengl"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="
+	${PYTHON_DEPS}
+	dev-lang/tk[threads]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-tcltk/tix
+	=sci-libs/ccpn-data-"${MY_MAJOR}"*[${PYTHON_USEDEP}]
+	sci-biology/psipred
+	x11-libs/libXext
+	x11-libs/libX11
+	opengl? (
+		media-libs/freeglut
+		dev-python/pyglet[${PYTHON_USEDEP}] )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="mirror"
+
+S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2)
+
+src_prepare() {
+	[[ -n ${PATCHSET} ]] && \
+		EPATCH_OPTS="-p2" epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
+
+	epatch "${FILESDIR}"/2.3.1-parallel.patch
+
+	append-lfs-flags
+
+	sed \
+		-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
+		-e "s:weights_s:weights:g" \
+		-i python/ccpnmr/analysis/wrappers/Psipred.py || die
+
+	local tk_ver
+	local myconf
+
+	tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
+
+	if use opengl; then
+		GLUT_NEED_INIT="-DNEED_GLUT_INIT"
+		IGNORE_GL_FLAG=""
+		GL_FLAG="-DUSE_GL_TRUE"
+		GL_DIR="${EPREFIX}/usr"
+		GL_LIB="-lglut -lGLU -lGL"
+		GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
+		GL_LIB_FLAGS=""
+	else
+		IGNORE_GL_FLAG="-DIGNORE_GL"
+		GL_FLAG="-DUSE_GL_FALSE"
+	fi
+
+	GLUT_NOT_IN_GL=""
+	GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
+
+	rm -rf data model doc license || die
+
+	sed \
+		-e "s|/usr|${EPREFIX}/usr|g" \
+		-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
+		-e "s|^\(OPT_FLAG =\).*|\1 ${CPPFLAGS} ${CFLAGS}|g" \
+		-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
+		-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
+		-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
+		-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
+		-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
+		-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
+		-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
+		-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
+		-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
+		-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+		-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+		-e "s|^\(TK_LIB =\).*|\1 -ltk|g" \
+		-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+		-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I$(python_get_includedir)|g" \
+		-e "s|^\(PYTHON_LIB =\).*|\1 -l${EPYTHON}|g" \
+		c/environment_default.txt > c/environment.txt || die
+
+	sed \
+		-e 's:ln -s:cp -f:g' \
+		-i $(find python -name linkSharedObjs) || die
+}
+
+src_compile() {
+	emake -C c all
+	emake -C c links
+}
+
+src_install() {
+	local libdir
+	local tkver
+	local _wrapper
+
+	find . -name "*.pyc" -type f -delete || die
+
+	libdir=$(get_libdir)
+	tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
+
+	_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara extendNmr"
+	for wrapper in ${_wrapper}; do
+		sed \
+			-e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
+		   -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
+			-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
+			-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
+			-e "s|gentoopython|${EPYTHON}|g" \
+			-e "s|gentoousr|${EPREFIX}/usr|g" \
+			-e "s|//|/|g" \
+			"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
+		dobin "${T}"/${wrapper}
+	done
+
+	local in_path=$(python_get_sitedir)/${PN}
+	local files
+	local pydocs
+
+	pydocs="$(find python -name doc -type d)"
+	rm -rf ${pydocs} || die
+
+	for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
+	sed \
+		-e 's|#from __future__|from __future__|g' \
+		-i ${i} || die
+	done
+
+	dodir ${in_path#${EPREFIX}}/c
+
+	ebegin "Installing main files"
+		python_moduleinto ${PN}
+		python_domodule python
+	eend
+
+	ebegin "Adjusting permissions"
+	for _file in $(find "${ED}" -type f -name "*so"); do
+		chmod 755 ${_file}
+	done
+	eend
+	python_optimize
+}
diff --git a/sci-chemistry/ccpn/files/analysis b/sci-chemistry/ccpn/files/analysis
index 30250f09195e..828ed4e64ae9 100644
--- a/sci-chemistry/ccpn/files/analysis
+++ b/sci-chemistry/ccpn/files/analysis
@@ -2,7 +2,6 @@
 
 export CCPNMR_TOP_DIR=gentoo_sitedir
 export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-export LD_LIBRARY_PATH=gentoolibdir
 export TCL_LIBRARY=gentootcl
 export TK_LIBRARY=gentootk
 export PSIPRED_DIR=gentoousr
diff --git a/sci-chemistry/ccpn/files/dangle b/sci-chemistry/ccpn/files/dangle
index fe2bccb1107f..6d8a42e615de 100644
--- a/sci-chemistry/ccpn/files/dangle
+++ b/sci-chemistry/ccpn/files/dangle
@@ -2,7 +2,6 @@
 
 export CCPNMR_TOP_DIR=gentoo_sitedir
 export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-export LD_LIBRARY_PATH=gentoolibdir
 export TCL_LIBRARY=gentootcl
 export TK_LIBRARY=gentootk
 export PSIPRED_DIR=gentoousr
diff --git a/sci-chemistry/ccpn/files/dataShifter b/sci-chemistry/ccpn/files/dataShifter
index a5b7f9059916..c083960f2f60 100644
--- a/sci-chemistry/ccpn/files/dataShifter
+++ b/sci-chemistry/ccpn/files/dataShifter
@@ -2,7 +2,6 @@
 
 export CCPNMR_TOP_DIR=gentoo_sitedir
 export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-export LD_LIBRARY_PATH=gentoolibdir
 export TCL_LIBRARY=gentootcl
 export TK_LIBRARY=gentootk
 export PSIPRED_DIR=gentoousr
diff --git a/sci-chemistry/ccpn/files/depositionFileImporter b/sci-chemistry/ccpn/files/depositionFileImporter
index 7f3a70f725e8..09505ccc4925 100644
--- a/sci-chemistry/ccpn/files/depositionFileImporter
+++ b/sci-chemistry/ccpn/files/depositionFileImporter
@@ -2,7 +2,6 @@
 
 export CCPNMR_TOP_DIR=gentoo_sitedir
 export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-export LD_LIBRARY_PATH=gentoolibdir
 export TCL_LIBRARY=gentootcl
 export TK_LIBRARY=gentootk
 export PSIPRED_DIR=gentoousr
diff --git a/sci-chemistry/ccpn/files/eci b/sci-chemistry/ccpn/files/eci
index 40472bc06e8d..54d913348718 100644
--- a/sci-chemistry/ccpn/files/eci
+++ b/sci-chemistry/ccpn/files/eci
@@ -2,7 +2,6 @@
 
 export CCPNMR_TOP_DIR=gentoo_sitedir
 export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-export LD_LIBRARY_PATH=gentoolibdir
 export TCL_LIBRARY=gentootcl
 export TK_LIBRARY=gentootk
 export PSIPRED_DIR=gentoousr
diff --git a/sci-chemistry/ccpn/files/extendNmr b/sci-chemistry/ccpn/files/extendNmr
index e29298038c13..a2fe4c997c7c 100644
--- a/sci-chemistry/ccpn/files/extendNmr
+++ b/sci-chemistry/ccpn/files/extendNmr
@@ -2,7 +2,6 @@
 
 export CCPNMR_TOP_DIR=gentoo_sitedir
 export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-export LD_LIBRARY_PATH=gentoolibdir
 export TCL_LIBRARY=gentootcl
 export TK_LIBRARY=gentootk
 export PSIPRED_DIR=gentoousr
diff --git a/sci-chemistry/ccpn/files/formatConverter b/sci-chemistry/ccpn/files/formatConverter
index b310e0d6a426..6cb273612352 100644
--- a/sci-chemistry/ccpn/files/formatConverter
+++ b/sci-chemistry/ccpn/files/formatConverter
@@ -2,7 +2,6 @@
 
 export CCPNMR_TOP_DIR=gentoo_sitedir
 export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-export LD_LIBRARY_PATH=gentoolibdir
 export TCL_LIBRARY=gentootcl
 export TK_LIBRARY=gentootk
 export PSIPRED_DIR=gentoousr
diff --git a/sci-chemistry/ccpn/files/pipe2azara b/sci-chemistry/ccpn/files/pipe2azara
index 48b47342c501..5a3710a134a7 100644
--- a/sci-chemistry/ccpn/files/pipe2azara
+++ b/sci-chemistry/ccpn/files/pipe2azara
@@ -2,7 +2,6 @@
 
 export CCPNMR_TOP_DIR=gentoo_sitedir
 export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-export LD_LIBRARY_PATH=gentoolibdir
 export TCL_LIBRARY=gentootcl
 export TK_LIBRARY=gentootk
 export PSIPRED_DIR=gentoousr
diff --git a/sci-chemistry/ccpn/files/xeasy2azara b/sci-chemistry/ccpn/files/xeasy2azara
index f2775ade0510..7b73714c2fa5 100644
--- a/sci-chemistry/ccpn/files/xeasy2azara
+++ b/sci-chemistry/ccpn/files/xeasy2azara
@@ -2,7 +2,6 @@
 
 export CCPNMR_TOP_DIR=gentoo_sitedir
 export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
-export LD_LIBRARY_PATH=gentoolibdir
 export TCL_LIBRARY=gentootcl
 export TK_LIBRARY=gentootk
 export PSIPRED_DIR=gentoousr