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authorJustin Lecher <jlec@gentoo.org>2013-06-02 14:03:04 +0000
committerJustin Lecher <jlec@gentoo.org>2013-06-02 14:03:04 +0000
commit7c7b988b6bc546835dff901faa28799650c271b3 (patch)
treed98684c280c1db93a91253e24d635e80ed47b94e /sci-chemistry
parentStable for HPPA (bug #470580). (diff)
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sci-chemistry/refmac: Drop obsolete versions
Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/refmac/ChangeLog5
-rw-r--r--sci-chemistry/refmac/Manifest14
-rw-r--r--sci-chemistry/refmac/refmac-5.6.0119.ebuild86
3 files changed, 10 insertions, 95 deletions
diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog
index 6b6311c81e4c..a533f61d6b84 100644
--- a/sci-chemistry/refmac/ChangeLog
+++ b/sci-chemistry/refmac/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/refmac
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.57 2013/02/27 14:40:04 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.58 2013/06/02 14:03:03 jlec Exp $
+
+ 02 Jun 2013; Justin Lecher <jlec@gentoo.org> -refmac-5.6.0119.ebuild:
+ Drop obsolete versions
27 Feb 2013; Justin Lecher <jlec@gentoo.org> refmac-5.5.0110-r3.ebuild,
refmac-5.6.0119.ebuild:
diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest
index 7b829422b331..baa48e1cea49 100644
--- a/sci-chemistry/refmac/Manifest
+++ b/sci-chemistry/refmac/Manifest
@@ -1,22 +1,20 @@
-----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
AUX 5.5-test.log.patch 1146 SHA256 d2c2a09f44e525dc255bc2ac93ca4194b24ca1fe58c31f0e3b5c32e439dfe2e7 SHA512 1819470e5e03c6748bce050acdb87b8f8ca38855f489f49cc2083f6d5c433e0dd3f27f44efa93cd6b9782c2254ea3e4d3a995cf2fb637aea116d4e932fd896f8 WHIRLPOOL 2816f0c98f26e2a31e19a82e0cf902fcde56dd3cb27975dad3741070c35d278f309d88c7d0926a36e873b036b47935bf8217130d7f767395af347d957d3cfead
AUX 5.5.0110-allow-dynamic-linking.patch 2730 SHA256 72e782184abc94f8efa46082e3b0d30000e745c8ee9141affa2c178b1cf87d35 SHA512 c14464441ebd16a1904b54226405cfecfc01b65b8db181f84ba0ca48593ab6371c819686c73a57b758859eb8c2a239186da1ea96f2a25746c181c938eb41398c WHIRLPOOL 78b9850021d4ac943ce2fa5964ac30ec659a1bb17367baf683fb29c35c76efdb2036da3d0e5339ae8d360023a1b3068cbfacbd14e09f358caf7e3dabd103115e
AUX 5.5.0110-gcc4.6.patch 473 SHA256 a33de3aa7236a6b711d5f578fea549da03130eabb061252c40b57e8ce3fe1778 SHA512 671a54407e75c3a89ff7ecd0e060d6ee7b83e5242a4350b907b24a53dde4de21b31e174e5cdc5dcf2d702a220bf6c5a1c7b45806142c06c7cd1ea92c086e6db3 WHIRLPOOL 586ebd6fcf20cd9ec14ae01ca1c50f7e7d34276fb8cb7db3e49bd7771423c3862f90d7794727e9ab05bd5438379e559ca7bca43b71778054c08bd5985533282a
AUX 5.6.0110-allow-dynamic-linking.patch 16438 SHA256 ac854d5e755b05809d4015763b6ea8552f1733d5bc5073778ce82c812083624b SHA512 7b51ed8e9818614cb80d089c6918ffdca9d70adcb6027845f282180750e0ba477849da79f3f5b5c46c7411361e7b555b961e30241b97a7d33cbf08686dead518 WHIRLPOOL 847aee909641fbfd64a182996359a3151915536fdc37a7fd1b3d4085b133b4d2f98415c497e6b64529bde232f602949c9149f40f74473124e4811eabbfe9b5bb
AUX 5.6.0116-allow-dynamic-linking.patch 16438 SHA256 ac854d5e755b05809d4015763b6ea8552f1733d5bc5073778ce82c812083624b SHA512 7b51ed8e9818614cb80d089c6918ffdca9d70adcb6027845f282180750e0ba477849da79f3f5b5c46c7411361e7b555b961e30241b97a7d33cbf08686dead518 WHIRLPOOL 847aee909641fbfd64a182996359a3151915536fdc37a7fd1b3d4085b133b4d2f98415c497e6b64529bde232f602949c9149f40f74473124e4811eabbfe9b5bb
-DIST refmac5.6_source_v5.6.0119.tar.gz 1401231 SHA256 928085930ba8893814bffd6f959c91bdad97b4ad27f6703455a4e3ad93b2ef1e SHA512 26428cd894c5dbd9e1b2e36efeb40c6c9c059c8a6e032c72c48d83c2d59adfada0abee3a4359fa518e9573a99c0d9c99adf826566609b5c23d5bb9f4c17505c2 WHIRLPOOL d91472a7963c0b0b08478b48b6f0ff3152bb3ae7760aa403a5cb6d167588d61dfaa453b9c7b54f0fd4a1d20e331e7110fbdbb49cf78bf3da8110c9fedc7f9941
DIST refmac_5.5.0110.tar.gz 1326832 SHA256 1353fb1042586ec8fa37d0a90f274890d0ccc02377af5216200662338dfe08ca SHA512 7e7fd1a7d2d11ef5f2e08cae61da62ecfe6978730ce4ca80f8b00be9bdad5e7d0ad493e1b8d57d64f1393f2017a87b8342e2607b08bc4018def798038a111728 WHIRLPOOL 587260eebd2df3115ba01ee03c11ab773d7316100a09af1f259f7795a139f978d94c569b8e4ab85982c2eeda628e643376231bdca5311fc8c7d2de5b65a033ac
DIST test-framework.tar.gz 130933173 SHA256 df050a2a29da80518cb0616a0bbeb82298ea0721549348d15353bf0f66240605 SHA512 3ef8253f472c5a481f836291afb80746ad73858e130130b848851b6b5dc53ada3b78c9f853af1c46fa22f469f2ce2f3248f5f760950e118610922c0429a7da16 WHIRLPOOL 022c1b493ecd35e769b44d1e52a351b4883682ef9759626bac36e26cc61078d95de0ec2531ed706897c683c38727139fa7a13d06b64c597026817ed79612d16d
EBUILD refmac-5.5.0110-r3.ebuild 2262 SHA256 f9d5070edb801c98808e715bc451ef6d54a950b13bd69aab798017a8b8c59f03 SHA512 8a1a27f91c05edaee74a49027509e3af4e3a59664a1d10e003073d346a9b56ba5f397fa0abd4f18775c871d99dc2906c11f56c563b74b523f886e3fae39fc646 WHIRLPOOL ad1cdea4818fb08910129ac6ea99656ecb91f8af4518a2c5e1413884c7ec05ffa1106d2c1c7d0197c853ccbd584f3cdc29aec8464869b1067ffbee53de820722
-EBUILD refmac-5.6.0119.ebuild 2273 SHA256 84a987b6ff91ca071a1a9a960373c6851cad13b9d2e59b2d57a8449093895a06 SHA512 9cd2c28128c76a4ca434bed22e6bcfc3fa384e0efd4a50fe8e3e3350ea0861ec1e57097d1320ddc713b7bbbd4202ad445e995c6f249e56453958c7ea0a01c319 WHIRLPOOL dab205547b8a114a60545f23dfa2cd6abe0e0a6acf0090db8f7c1ed0cf8743fa9ad8b7b7143b04ba3bb676915f2117f9109a3965bf6211eecaff3f236df51798
-MISC ChangeLog 10821 SHA256 d468989a9cea37154ea1446a14324ac1a174ec1a415d605c5d960a63190308ee SHA512 d044425376c6027712ff2429c1db67a5ecdf81bd9fdf5c200a68afcf741c507300aa13daccc6877b246431e7ad0db48c2a9c696c0d39f2cd25562cbe400bb8e4 WHIRLPOOL c2ed9d4427dd059ba00b4f44664626366b8c356df848259f565623bd36086d34576717cfb362c671d2209a92fa24c87f52480dabe87222a4e47654518e807a8e
+MISC ChangeLog 10919 SHA256 fad3b0f4f25d303e299622a0b71d2e42a32fc139438fb9453ba4bfde4399fd5f SHA512 3a4317f904c9d64594c7118807405dd46e5999cb86e0d988db7d15a48daafb827d88994a5876e2da2c3ffe16dae83b4a3d21cac74fb7e93d7fab1ecbe361476e WHIRLPOOL 05913e2e490577711bfaf2c751628d03bc85d404df1b9ac38a9e62b15cae26c8333e6e6732278b0f4e5a698f539d45ed2bc2966001e2c5bd9a4f864fc6151620
MISC metadata.xml 262 SHA256 c21be8fbf84e93744d2e7ae2d1f5efd28cecac4e5e810d6872fa601ac3e40692 SHA512 1e97a1b3fb47e2c34df3f89d2c124196801ee212860de36e00db01840e5955fca164a597648ede8f5153574dbd6f8998489033e0163008f3209cced7faf88ea3 WHIRLPOOL ed476611f6cb3be8dfd4d0535caf03b65380484c8b81bf31dafcf80b93a4fef3b2e4936f2c98718f2f5c7f975e82e89aa96358d2343e11363910858fad43b554
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diff --git a/sci-chemistry/refmac/refmac-5.6.0119.ebuild b/sci-chemistry/refmac/refmac-5.6.0119.ebuild
deleted file mode 100644
index 6461102c30ae..000000000000
--- a/sci-chemistry/refmac/refmac-5.6.0119.ebuild
+++ /dev/null
@@ -1,86 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0119.ebuild,v 1.4 2013/02/27 14:40:04 jlec Exp $
-
-EAPI=4
-
-inherit base fortran-2 flag-o-matic toolchain-funcs versionator
-
-MY_PV="$(get_version_component_range 1-2)_source_v${PV}"
-
-DESCRIPTION="Macromolecular crystallographic refinement program"
-HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac"
-SRC_URI="
- ${HOMEPAGE}/data/refmac_experimental/${PN}${MY_PV}.tar.gz
- test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"
-
-SLOT="0"
-LICENSE="ccp4"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
- !sci-chemistry/makecif
- >=sci-libs/ccp4-libs-6.1.3-r7
- sci-libs/mmdb
- >sci-libs/monomer-db-1
- virtual/blas
- virtual/lapack"
-DEPEND="${RDEPEND}
- virtual/pkgconfig"
-
-FORTRAN_STANDARD="77 90"
-
-S="${WORKDIR}"
-
-PATCHES=(
- "${FILESDIR}"/5.6.0116-allow-dynamic-linking.patch
- )
-
-src_prepare() {
- base_src_prepare
- use test && epatch "${FILESDIR}"/5.5-test.log.patch
- [[ ${FC} == *gfortran* ]] && \
- append-fflags -fno-second-underscore && \
- append-cflags -DGFORTRAN -DPROTOTYPE && \
- append-libs -lgfortran -lgfortranbegin -lstdc++
- [[ ${FC} == *ifort* ]] && \
- append-libs -lstdc++
-}
-
-src_compile() {
- emake \
- FC=$(tc-getFC) \
- CC=$(tc-getCC) \
- CXX=$(tc-getCXX) \
- COPTIM="${CFLAGS}" \
- FOPTIM="${FFLAGS:- -O2}" \
- VERSION="" \
- XFFLAGS="-fwhole-file" \
- XCFLAGS="" \
- LLIBCCP="-lccp4f -lccp4c -lccif $($(tc-getPKG_CONFIG) --libs mmdb)" \
- LLIBLAPACK="$($(tc-getPKG_CONFIG) --libs lapack blas)" \
- LLIBOTHERS="${LIBS}"
-}
-
-src_test() {
- einfo "Starting tests ..."
- source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
- export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
- export CCP4_TEST="${WORKDIR}"/test-framework
- export CCP4_SCR="${T}"
- ln -sf refmac "${S}"/refmac5
- sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
- ccp4-run-thorough-tests -v test_refmac5 || die
-}
-
-src_install() {
- for i in refmac libcheck FreeTwin header2matr; do
- exeinto /usr/libexec/ccp4/bin/
- doexe ${i}
- dosym ../libexec/ccp4/bin/${i} /usr/bin/${i}
- done
- dosym refmac /usr/bin/refmac5
- dosym refmac /usr/libexec/ccp4/bin/refmac5
- dodoc *.pdf
-}