diff options
author | Justin Lecher <jlec@gentoo.org> | 2013-06-02 14:03:04 +0000 |
---|---|---|
committer | Justin Lecher <jlec@gentoo.org> | 2013-06-02 14:03:04 +0000 |
commit | 7c7b988b6bc546835dff901faa28799650c271b3 (patch) | |
tree | d98684c280c1db93a91253e24d635e80ed47b94e /sci-chemistry | |
parent | Stable for HPPA (bug #470580). (diff) | |
download | historical-7c7b988b6bc546835dff901faa28799650c271b3.tar.gz historical-7c7b988b6bc546835dff901faa28799650c271b3.tar.bz2 historical-7c7b988b6bc546835dff901faa28799650c271b3.zip |
sci-chemistry/refmac: Drop obsolete versions
Package-Manager: portage-2.2.0_alpha177/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'sci-chemistry')
-rw-r--r-- | sci-chemistry/refmac/ChangeLog | 5 | ||||
-rw-r--r-- | sci-chemistry/refmac/Manifest | 14 | ||||
-rw-r--r-- | sci-chemistry/refmac/refmac-5.6.0119.ebuild | 86 |
3 files changed, 10 insertions, 95 deletions
diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog index 6b6311c81e4c..a533f61d6b84 100644 --- a/sci-chemistry/refmac/ChangeLog +++ b/sci-chemistry/refmac/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-chemistry/refmac # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.57 2013/02/27 14:40:04 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.58 2013/06/02 14:03:03 jlec Exp $ + + 02 Jun 2013; Justin Lecher <jlec@gentoo.org> -refmac-5.6.0119.ebuild: + Drop obsolete versions 27 Feb 2013; Justin Lecher <jlec@gentoo.org> refmac-5.5.0110-r3.ebuild, refmac-5.6.0119.ebuild: diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest index 7b829422b331..baa48e1cea49 100644 --- a/sci-chemistry/refmac/Manifest +++ b/sci-chemistry/refmac/Manifest @@ -1,22 +1,20 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA256 +Hash: SHA512 AUX 5.5-test.log.patch 1146 SHA256 d2c2a09f44e525dc255bc2ac93ca4194b24ca1fe58c31f0e3b5c32e439dfe2e7 SHA512 1819470e5e03c6748bce050acdb87b8f8ca38855f489f49cc2083f6d5c433e0dd3f27f44efa93cd6b9782c2254ea3e4d3a995cf2fb637aea116d4e932fd896f8 WHIRLPOOL 2816f0c98f26e2a31e19a82e0cf902fcde56dd3cb27975dad3741070c35d278f309d88c7d0926a36e873b036b47935bf8217130d7f767395af347d957d3cfead AUX 5.5.0110-allow-dynamic-linking.patch 2730 SHA256 72e782184abc94f8efa46082e3b0d30000e745c8ee9141affa2c178b1cf87d35 SHA512 c14464441ebd16a1904b54226405cfecfc01b65b8db181f84ba0ca48593ab6371c819686c73a57b758859eb8c2a239186da1ea96f2a25746c181c938eb41398c WHIRLPOOL 78b9850021d4ac943ce2fa5964ac30ec659a1bb17367baf683fb29c35c76efdb2036da3d0e5339ae8d360023a1b3068cbfacbd14e09f358caf7e3dabd103115e AUX 5.5.0110-gcc4.6.patch 473 SHA256 a33de3aa7236a6b711d5f578fea549da03130eabb061252c40b57e8ce3fe1778 SHA512 671a54407e75c3a89ff7ecd0e060d6ee7b83e5242a4350b907b24a53dde4de21b31e174e5cdc5dcf2d702a220bf6c5a1c7b45806142c06c7cd1ea92c086e6db3 WHIRLPOOL 586ebd6fcf20cd9ec14ae01ca1c50f7e7d34276fb8cb7db3e49bd7771423c3862f90d7794727e9ab05bd5438379e559ca7bca43b71778054c08bd5985533282a AUX 5.6.0110-allow-dynamic-linking.patch 16438 SHA256 ac854d5e755b05809d4015763b6ea8552f1733d5bc5073778ce82c812083624b SHA512 7b51ed8e9818614cb80d089c6918ffdca9d70adcb6027845f282180750e0ba477849da79f3f5b5c46c7411361e7b555b961e30241b97a7d33cbf08686dead518 WHIRLPOOL 847aee909641fbfd64a182996359a3151915536fdc37a7fd1b3d4085b133b4d2f98415c497e6b64529bde232f602949c9149f40f74473124e4811eabbfe9b5bb AUX 5.6.0116-allow-dynamic-linking.patch 16438 SHA256 ac854d5e755b05809d4015763b6ea8552f1733d5bc5073778ce82c812083624b SHA512 7b51ed8e9818614cb80d089c6918ffdca9d70adcb6027845f282180750e0ba477849da79f3f5b5c46c7411361e7b555b961e30241b97a7d33cbf08686dead518 WHIRLPOOL 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1e97a1b3fb47e2c34df3f89d2c124196801ee212860de36e00db01840e5955fca164a597648ede8f5153574dbd6f8998489033e0163008f3209cced7faf88ea3 WHIRLPOOL ed476611f6cb3be8dfd4d0535caf03b65380484c8b81bf31dafcf80b93a4fef3b2e4936f2c98718f2f5c7f975e82e89aa96358d2343e11363910858fad43b554 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.19 (GNU/Linux) +Version: GnuPG v2.0.20 (GNU/Linux) -iEYEAREIAAYFAlEuGsUACgkQgAnW8HDreRaElgCfY27yrhjtFiLAXHnPugDrInbt -Mr8AoMPf4xR8at38/7uh3IiHNUTHJ4a8 -=bWzq +iEYEAREKAAYFAlGrUJgACgkQgAnW8HDreRaW2wCgyMvnPURUKtMqN/DZO8csBxnZ +5XcAoKiIeIYj+umMu2Y8Vby/S9uIDU3s +=yb0J -----END PGP SIGNATURE----- diff --git a/sci-chemistry/refmac/refmac-5.6.0119.ebuild b/sci-chemistry/refmac/refmac-5.6.0119.ebuild deleted file mode 100644 index 6461102c30ae..000000000000 --- a/sci-chemistry/refmac/refmac-5.6.0119.ebuild +++ /dev/null @@ -1,86 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0119.ebuild,v 1.4 2013/02/27 14:40:04 jlec Exp $ - -EAPI=4 - -inherit base fortran-2 flag-o-matic toolchain-funcs versionator - -MY_PV="$(get_version_component_range 1-2)_source_v${PV}" - -DESCRIPTION="Macromolecular crystallographic refinement program" -HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac" -SRC_URI=" - ${HOMEPAGE}/data/refmac_experimental/${PN}${MY_PV}.tar.gz - test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" - -SLOT="0" -LICENSE="ccp4" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" -IUSE="test" - -RDEPEND=" - !sci-chemistry/makecif - >=sci-libs/ccp4-libs-6.1.3-r7 - sci-libs/mmdb - >sci-libs/monomer-db-1 - virtual/blas - virtual/lapack" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -FORTRAN_STANDARD="77 90" - -S="${WORKDIR}" - -PATCHES=( - "${FILESDIR}"/5.6.0116-allow-dynamic-linking.patch - ) - -src_prepare() { - base_src_prepare - use test && epatch "${FILESDIR}"/5.5-test.log.patch - [[ ${FC} == *gfortran* ]] && \ - append-fflags -fno-second-underscore && \ - append-cflags -DGFORTRAN -DPROTOTYPE && \ - append-libs -lgfortran -lgfortranbegin -lstdc++ - [[ ${FC} == *ifort* ]] && \ - append-libs -lstdc++ -} - -src_compile() { - emake \ - FC=$(tc-getFC) \ - CC=$(tc-getCC) \ - CXX=$(tc-getCXX) \ - COPTIM="${CFLAGS}" \ - FOPTIM="${FFLAGS:- -O2}" \ - VERSION="" \ - XFFLAGS="-fwhole-file" \ - XCFLAGS="" \ - LLIBCCP="-lccp4f -lccp4c -lccif $($(tc-getPKG_CONFIG) --libs mmdb)" \ - LLIBLAPACK="$($(tc-getPKG_CONFIG) --libs lapack blas)" \ - LLIBOTHERS="${LIBS}" -} - -src_test() { - einfo "Starting tests ..." - source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh" - export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" - export CCP4_TEST="${WORKDIR}"/test-framework - export CCP4_SCR="${T}" - ln -sf refmac "${S}"/refmac5 - sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb - ccp4-run-thorough-tests -v test_refmac5 || die -} - -src_install() { - for i in refmac libcheck FreeTwin header2matr; do - exeinto /usr/libexec/ccp4/bin/ - doexe ${i} - dosym ../libexec/ccp4/bin/${i} /usr/bin/${i} - done - dosym refmac /usr/bin/refmac5 - dosym refmac /usr/libexec/ccp4/bin/refmac5 - dodoc *.pdf -} |