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authorJustin Lecher <jlec@gentoo.org>2015-01-06 11:57:50 +0000
committerJustin Lecher <jlec@gentoo.org>2015-01-06 11:57:50 +0000
commit751b2ceb840a0a63fd7dae0cd2c6d64193214b5b (patch)
treef2617cc97efba1bc7ee48ac921637e44aba2bfdf /sci-libs
parentrevbump; conversion -> distutils-r1, rm old (diff)
downloadhistorical-751b2ceb840a0a63fd7dae0cd2c6d64193214b5b.tar.gz
historical-751b2ceb840a0a63fd7dae0cd2c6d64193214b5b.tar.bz2
historical-751b2ceb840a0a63fd7dae0cd2c6d64193214b5b.zip
sci-libs/htslib: Version BUmp
Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
Diffstat (limited to 'sci-libs')
-rw-r--r--sci-libs/htslib/ChangeLog9
-rw-r--r--sci-libs/htslib/Manifest32
-rw-r--r--sci-libs/htslib/htslib-1.1.ebuild46
3 files changed, 70 insertions, 17 deletions
diff --git a/sci-libs/htslib/ChangeLog b/sci-libs/htslib/ChangeLog
index f519eae06e9b..101f2066b547 100644
--- a/sci-libs/htslib/ChangeLog
+++ b/sci-libs/htslib/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-libs/htslib
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/htslib/ChangeLog,v 1.4 2014/09/20 19:20:13 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/htslib/ChangeLog,v 1.5 2015/01/06 11:57:49 jlec Exp $
+
+*htslib-1.1 (06 Jan 2015)
+
+ 06 Jan 2015; Justin Lecher <jlec@gentoo.org> +htslib-1.1.ebuild:
+ Version BUmp
20 Sep 2014; Justin Lecher <jlec@gentoo.org> htslib-1.0.ebuild:
Fix pc file prefix problems
diff --git a/sci-libs/htslib/Manifest b/sci-libs/htslib/Manifest
index e393a8225e47..6f54614992ee 100644
--- a/sci-libs/htslib/Manifest
+++ b/sci-libs/htslib/Manifest
@@ -2,25 +2,27 @@
Hash: SHA512
DIST htslib-1.0.tar.bz2 842174 SHA256 3d53fb081fafd930cadfee6f950faacc1993a0f4a9fa329fc897865fc6b331bc SHA512 aee7080a31c3fe5bd1fe4a16102da4aef7d415fd022781c1a5bdc1316ca50f8fcabbb95a39adc867e4eb5ac2d8ed63ab15ceafcd768e840d2593282916313507 WHIRLPOOL 512f4a95e98129151fef34fb90294138bc0aec40d5c2345d15d49ded02810c4663b8ff65726ced9f0d9ceb300295da066f6025d2b1966224937fc9ff58f2b58f
+DIST htslib-1.1.tar.bz2 844870 SHA256 204e894074d9a864d27b607fda19f6240c5da351bb61bfc6c94beaa8790e4d58 SHA512 cde0b01583035f139203b8e9884dc97846bdf02fbb6dd2af74d0829270c2141ac490d0ca3ece4f9afd9d66d6af235452d3e94bbe0ea6e1a8625405735a813271 WHIRLPOOL 56e986cd7ee29d2d680ef55fd9128d4e43bacff4d72bc83df7b8c1e6c8d53b4a726c576d690dee272397778a6796096072fc3fffe4a4f1cbc0179a91fe9405b6
EBUILD htslib-1.0.ebuild 944 SHA256 ee786f48b5581116c340f946c80f8c1f708c55eea81406d48f93c324054c2711 SHA512 562d15dbe04f4485710363423cb04da69cad3f685399a749f877690861ad1f05804a1c6ded669fc27a718ae4829d8de7eda3324522cd4a2c43ea9210bc38c62a WHIRLPOOL 2c3276d551ce29bbdd48c3f0d50aa3a69587e51f16e42b32cc4a6f8e2f0e8943c4d3888f8dd9e9be99d7c00b5fce3a1f131c59b5ed601787f7db05d124ee9fc0
-MISC ChangeLog 622 SHA256 b54fd2285a300ffadfb7e97fa37272f1e5d9f1746750b6c84a8d512886d64cf5 SHA512 838892e1aa393d80617a6e9c1b6fc7fc3e714a4e1246b4d11722508d413cd29b208590933ff25a1f9ecb5b400ec1a609e92ace09eaf4d2d74f0b5739244a9ba0 WHIRLPOOL 056dee21ca6cd15ed03952c5e24dda1f1831b3d025f6e8d4aee53879e58da758bcafa8b1ff7354909294d40308df6be427f7fd5667586701499f8773b57d8575
+EBUILD htslib-1.1.ebuild 945 SHA256 74444762d3a6556adf5d8d036a90ce9248516097ef96a7d87b45159d410240ce SHA512 e0e6cf08c4a0459133e714bd97aa4da4fb894291a5e7da69d2bf40d92eff4a8091bee7a8edd610958bf4b6607abad81195fdc4bfb547d31ba25100b2b1865caf WHIRLPOOL bbb8e0b42e86d7fbc0dfc23c93bfeb0eb62b2c663a0612ea76d773669eee35cf5c10597afa054390e7a1d2d618e9cdcd75d46d1b8d6dcf212a0daeeb9860924b
+MISC ChangeLog 732 SHA256 7172851e1422786d38db77388de3731dfee2b410097eeb244a819453a09a916c SHA512 e004744b543ce1980bcae917b25a32d3597b700a5c62e8277f5a641eac0c92ba683c024b876ade6e8c4090b7d9d06589dff1af3ec369e40e2c80ff1ff166d759 WHIRLPOOL 58c15950cc2de60371f4e317ddf3e8ddc90a2d4df9f2fb4cffe9e51fe7c505002e1b0c043074440a2d153335dc9a3c9e73d39e3d2a954c9511fafea728428cfd
MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-libs/htslib/htslib-1.1.ebuild b/sci-libs/htslib/htslib-1.1.ebuild
new file mode 100644
index 000000000000..ed6b7d00ac24
--- /dev/null
+++ b/sci-libs/htslib/htslib-1.1.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/htslib/htslib-1.1.ebuild,v 1.1 2015/01/06 11:57:49 jlec Exp $
+
+EAPI=5
+
+inherit multilib toolchain-funcs
+
+DESCRIPTION="C library for high-throughput sequencing data formats"
+HOMEPAGE="http://www.htslib.org/"
+SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
+
+SLOT="0"
+LICENSE="MIT"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="static-libs"
+
+src_prepare() {
+ sed \
+ -e "/libdir/s:lib$:$(get_libdir):g" \
+ -i Makefile || die
+}
+
+src_compile() {
+ emake \
+ AR="$(tc-getAR)" \
+ CC="$(tc-getCC)" \
+ CFLAGS="${CFLAGS}" \
+ LDFLAGS="${LDFLAGS}"
+}
+
+src_install() {
+ emake \
+ DESTDIR="${D}" \
+ prefix="${EPREFIX}/usr" \
+ install
+
+ rm "${ED}/usr/share/man/man1/libhts.so.1" || die
+
+ if ! use static-libs; then
+ find "${ED}" -type f -name "*.a" -delete || die
+ fi
+
+ dodoc README
+}
+