Version bump. This version is includes patches from upstream (included in sources), some local gcc-4.3 patches and various xrootd patches. Now works with afs on amd64. Removed cint7 flag as it is still too buggy, added xrootd use flag, added a math flag triggering all math libraries (mathcore, mathmore, minuit2, roofit, unuran). Much cleanup: qt-4.4 ready, removed afterimage dependency (will be back in 5.20). This version should be targeted for stabilization.

Package-Manager: portage-2.1.5.2

7 files changed, 2036 insertions, 2 deletions

diff --git a/sci-physics/root/ChangeLog b/sci-physics/root/ChangeLog
index d4e27ba73387..cd9742e00aef 100644
--- a/sci-physics/root/ChangeLog
+++ b/sci-physics/root/ChangeLog
@@ -1,6 +1,20 @@
 # ChangeLog for sci-physics/root
 # Copyright 2002-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-physics/root/ChangeLog,v 1.24 2008/05/21 19:02:38 dev-zero Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-physics/root/ChangeLog,v 1.25 2008/05/29 18:55:33 bicatali Exp $
+
+*root-5.18.00d (29 May 2008)
+
+  29 May 2008; Sébastien Fabbro <bicatali@gentoo.org>
+  +files/root-5.18.00d-gcc43.patch, +files/root-5.18.00d-makefile.patch,
+  +files/xrootd-20071116-checksymbol.patch,
+  +files/xrootd-20071116-gcc43.patch, +root-5.18.00d.ebuild:
+  Version bump. This version is includes patches from upstream (included in
+  sources), some local gcc-4.3 patches and various xrootd patches. Now works
+  with afs on amd64. Removed cint7 flag as it is still too buggy, added
+  xrootd use flag, added a math flag triggering all math libraries
+  (mathcore, mathmore, minuit2, roofit, unuran). Much cleanup: qt-4.4 ready,
+  removed afterimage dependency (will be back in 5.20). This version should
+  be targeted for stabilization.
 
   21 May 2008; Tiziano Müller <dev-zero@gentoo.org> root-3.05.04.ebuild,
   root-5.16.00.ebuild, root-5.16.00-r1.ebuild, root-5.18.00.ebuild:
diff --git a/sci-physics/root/Manifest b/sci-physics/root/Manifest
index cdd2cd8b3eb1..f9cd49f7e723 100644
--- a/sci-physics/root/Manifest
+++ b/sci-physics/root/Manifest
@@ -1,19 +1,35 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX root-5.16.00-afs.patch 1320 RMD160 76896f12113782f9ee534b6920a1dde53eb09c72 SHA1 052a6113f5c2c4bc786f7f1d567c1990a5791d8b SHA256 04b2e484cad98943487f3691d57d20b923bb0ce5998f28f423f94995a832a9dc
 AUX root-5.16.00-flags.patch 502 RMD160 758a2b4977dc16f61e51297de855b532e30bf2c6 SHA1 17435caa24eb4ee5da738df11b167991b2663cbf SHA256 51eebc176ec25c46b470ef55f622cb3fcf60fbc2294ec94109cf10c13167f3c1
 AUX root-5.16.00-fortran.patch 5076 RMD160 2218584a3a5093a8d4171913a2b024bb759aae03 SHA1 4ed648d54260fd2593174154d8331c5d5afd5f09 SHA256 4ad7a3057528f30716d200c8f1462cf92da6f1ebef9bc3fee1874000bc10deec
 AUX root-5.16.00-postgres.patch 868 RMD160 5a79ae0308968bb579f4ae04eb8067fdb5c1668b SHA1 cf8eef875bd755ccbe827332661a2ce573dfafba SHA256 40e33d371e4cec38f7680a16bf089705ebdd835ef1c06989082508bf2c6dd638
 AUX root-5.16.00-xft.patch 687 RMD160 58efbc6efea7970ce267d05998deb8f849ecd5c5 SHA1 19ba24f17846a46d0ca10d0958587bd9166efd6d SHA256 e3540b4cecae6eb9e1c80e7edc923334056d63b4dedfc8bece34d29eec76d0a1
+AUX root-5.18.00d-gcc43.patch 21888 RMD160 f4f23ee8ac5ca833b7f2e05e57436f7cffa0bb40 SHA1 a89ab7e887c171abb81206c6cf3b6b42b732eb52 SHA256 3f9bd2a3639dfbd752b09d79dd9448ebb6ecd215146a4f13c7a490998cc564f4
+AUX root-5.18.00d-makefile.patch 667 RMD160 b99d04ff116bd6dce5c8d45dfedd474e83ab6a67 SHA1 00d8dbdc3b2398031547e9c4f793b3c857b14fd3 SHA256 a168d6fa609fcd61973a189039a59f03f8a21b9343644214eb9a16dcdba81c7f
 AUX root-pic.patch 1308 RMD160 7cd58a088d5b9b6d8dacf24a4966c0ece8ccc1db SHA1 a173c2c2a354df1b61a9ada4df81aa6784733f21 SHA256 204d8959d544e4b94546444d9a1912099cca90b477227ff85107c1e428fbb374
 AUX root-xrootd-flags.patch 436 RMD160 5b4a138b795ebe1030c9dabe7088a12c06e736d9 SHA1 03e500d10a6f530669f0b3d2701770561e87f82e SHA256 311ec777faed99503cbf3b1d942f961ace48a42ae051e94d5f085b96c19c3728
 AUX sparc-root-5.16.00.patch 1337 RMD160 182648130788f70df92342042a889e91ba665d24 SHA1 d46dbb7f10e83e5bcde97175ef5df71ea9750140 SHA256 bd3f08a8283e7b0e4b4f5f583fbe448cbc2908e2935e6bcc961085a58d6bbe3a
+AUX xrootd-20071116-checksymbol.patch 3725 RMD160 dc3439e73b232303f92c9f7e76e99044c1cba126 SHA1 41e69e83772b0962c348a5efa5705d65e4ef1c26 SHA256 45b14e5773ded2f6c828c2cd2629b50c63f9e4a96608c757c5b80c80dd394cb1
+AUX xrootd-20071116-gcc43.patch 26929 RMD160 37aeecaf72820a91846e0d49155e8ee2ea1bddf0 SHA1 156ca6a125d7f49f5e0412231f18d75ca7c9e754 SHA256 27472f3304d7ee028ef81a06a9abb2092e93d9324b85a6ceff0fcd81b9ddd879
 DIST Users_Guide_5_16.pdf 11196352 RMD160 149c2421b7453273e6e1d849e17b736878ebb316 SHA1 b5d4eade69a5b945aa37c182d83d5233c2d54475 SHA256 c20fb206aa3eff6f3ec034c24483c4ceed04e08a1eef8b117da7956c2f471d34
 DIST root-5.16.00-gcc-4.2.patch.bz2 18670 RMD160 254e50b4560a3b98dc39dd7a6df431df6935e457 SHA1 1038b64e5d6894bf218c7aea66478b91efd3b096 SHA256 581ac1071a8d5e0c31285ed11e9195a5ffb6577e2746d81d2cc8fadc060656d2
 DIST root_v3.05.04.source.tar.gz 9386408 RMD160 d20b2b5d933d8abf1a3343a9b8886a3ed97f1cfb SHA1 481f2b3a60e0c56be0a61f3e652e7e43c065aeb7 SHA256 ae93c08cfe4dc05c53fade420ac560fff88ec967b2e85b26a7268ef12e1bbe9e
 DIST root_v5.16.00.source.tar.gz 22210601 RMD160 3e9a29e6b899e3fb0986ef8a7b4a162d4933bf47 SHA1 0fcb1aba303b463598373ba44aa38a45279773e3 SHA256 41a36d9a469c8b86247aca59317fa40371db846555045679e759f7f332a927f8
 DIST root_v5.18.00.source.tar.gz 23804036 RMD160 e38e075706102cce5b97c4f0e921cf9ff4a53409 SHA1 4c150e93e25087d7594f1346e330901f97115e6e SHA256 a47ac29a826bd55717e4793806277c15d1e186bae9abe291bd2ff72843c19772
+DIST root_v5.18.00d.source.tar.gz 23581098 RMD160 8fd731b271d542e73ba0c7982f344d0c09c27ee7 SHA1 f046745864c287dafab8b152b6f18f1a5a431ba0 SHA256 e1ba9e307caf64868c3c2a8a66bcbc119f7d8e9599c8d3ec2860b3b7bbba2ac0
 EBUILD root-3.05.04.ebuild 1654 RMD160 7f96255fd29b2fc2f2d30e41aa1e41ac57d24622 SHA1 ca10f01367a50aa1c867a4e48e435f4eb24e5151 SHA256 d74fbfd44a1da70c297196b56885128ca47297c9c349f8a083050ff346058dce
 EBUILD root-5.16.00-r1.ebuild 5046 RMD160 dd854d5fda59f6117cf3eeb8d84d9240b753e5c9 SHA1 5e7abdf94333492fb3bc5a8e32aa4d2f6636d532 SHA256 194f725cb6356fecfec73484bb6ee74547a4f8f8f0e90800094c453a266e2d92
 EBUILD root-5.16.00.ebuild 4966 RMD160 d83d9b2c340f44e6e3b33fab6e8353101059c6ce SHA1 6a7695c895f6e734f5e9bc6ca4c59085a3d95748 SHA256 06d1ec56a70621f19d79dac76424829415eead9b58179b1f54627b8a19362bbd
 EBUILD root-5.18.00.ebuild 4807 RMD160 6cba0f5364492dc9ef1baa52785f81f86b23a325 SHA1 2318dd9e31135ca216b92951473b11810d4dcbfb SHA256 7d57f8f6591b6cc63b64de6506aab34a96b0ac868130519460f11c91d603f33c
-MISC ChangeLog 8592 RMD160 a3851ce1e6afb9aa89c4be2eb6ef06ce48d48904 SHA1 ba787fedd215a64eed5f2284b20ceb644d20519e SHA256 42c937bb87dac504f59d9a0fe20054b715ab8402e73781a80a26456756f93ff4
+EBUILD root-5.18.00d.ebuild 4852 RMD160 d12f05e1a3e92daedf50f1f9a797a22bd13af024 SHA1 031215bf308f31b67fbf187d5143180890478d37 SHA256 3a4cb64319e702ce6843f34f39572306aec04b69c8e3208bc37769ba892d2ff8
+MISC ChangeLog 9334 RMD160 c55ff2a5e42447c14ff84e8a6c5908d739847ed0 SHA1 d1f0de18f045e57c6feef9a95454cfc4eb61b05a SHA256 317de9a45ba5770dbaf8e65349cccf71157828290a1d727b42558e01b5bbe287
 MISC metadata.xml 597 RMD160 d61e05bcfed3b0839b7daf4cf3fdac3fcdfd268d SHA1 8fd69478a8a90f6222b1e428961815e0e697905a SHA256 8ae8ab4051e8534ca2df70f81fb999c478b8f1223980c0b366dc0501fa987c6c
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.9 (GNU/Linux)
+
+iEYEARECAAYFAkg+/DUACgkQ1ycZbhPLE2CgfgCdEAL48GFhY2hF/lu+Y2jM8qRs
+2b8Anib9ZKYHHhTwZZJRM4u6qrGUwJye
+=OD7p
+-----END PGP SIGNATURE-----
diff --git a/sci-physics/root/files/root-5.18.00d-gcc43.patch b/sci-physics/root/files/root-5.18.00d-gcc43.patch
new file mode 100644
index 000000000000..64093de04e28
--- /dev/null
+++ b/sci-physics/root/files/root-5.18.00d-gcc43.patch
@@ -0,0 +1,732 @@
+--- auth/src/TAuthenticate.cxx.orig	2008-05-27 14:59:39.398520340 +0000
++++ auth/src/TAuthenticate.cxx	2008-05-27 15:00:18.112726537 +0000
+@@ -39,6 +39,7 @@
+ #include "snprintf.h"
+ #include "TVirtualMutex.h"
+ #include "TTimer.h"
++#include <cstdlib>
+ 
+ #ifndef R__LYNXOS
+ #include <sys/stat.h>
+--- ./auth/src/THostAuth.cxx.orig	2008-05-25 10:28:02.251108184 +0000
++++ ./auth/src/THostAuth.cxx	2008-05-25 10:28:13.215733022 +0000
+@@ -26,7 +26,7 @@
+ #include "TAuthenticate.h"
+ #include "TSocket.h"
+ #include "TUrl.h"
+-
++#include <cstdlib>
+ 
+ ClassImp(THostAuth)
+ 
+--- ./base/src/TAttAxis.cxx.orig	2008-05-24 22:36:33.708124609 +0000
++++ ./base/src/TAttAxis.cxx	2008-05-25 08:49:23.464427930 +0000
+@@ -16,6 +16,7 @@
+ #include "TColor.h"
+ #include "TClass.h"
+ #include "TMathBase.h"
++#include <cstdlib>
+ 
+ ClassImp(TAttAxis)
+ 
+--- ./base/src/TError.cxx.orig	2008-05-24 22:40:36.445957450 +0000
++++ ./base/src/TError.cxx	2008-05-24 22:40:55.715055533 +0000
+@@ -172,7 +172,7 @@
+          gSystem->StackTrace();
+          gSystem->Abort();
+       } else
+-         ::abort();
++         abort;
+    }
+ }
+ 
+--- ./base/src/TUUID.cxx.orig	2008-05-25 08:41:54.035949249 +0000
++++ ./base/src/TUUID.cxx	2008-05-25 08:42:18.485342541 +0000
+@@ -112,6 +112,7 @@
+ #include "TMD5.h"
+ #include "Bytes.h"
+ #include <string.h>
++#include <cstdlib>
+ #ifdef R__WIN32
+ #include "Windows4Root.h"
+ #include <Iphlpapi.h>
+--- ./cint/src/v6_newlink.cxx.orig	2008-05-24 22:24:14.891930941 +0000
++++ ./cint/src/v6_newlink.cxx	2008-05-24 22:30:11.464250840 +0000
+@@ -7419,7 +7419,7 @@
+     }
+     else {
+       if (type_name[0] == '\'') {
+-        type_name[std::strlen(type_name)-1] = '\0';
++        type_name[strlen(type_name)-1] = '\0';
+         typenum = G__defined_typename(type_name + 1);
+       }
+       else {
+@@ -7427,7 +7427,7 @@
+       }
+     }
+     G__separate_parameter(paras, &os, c_reftype_const);
+-    reftype_const = std::atoi(c_reftype_const);
++    reftype_const = atoi(c_reftype_const);
+ #ifndef G__OLDIMPLEMENTATION1861
+     //if (typenum != -1) {
+     // NO - this is already taken into account when writing the dictionary
+--- ./cint/tool/makecint.cxx.orig	2008-05-24 22:30:46.370240018 +0000
++++ ./cint/tool/makecint.cxx	2008-05-24 22:32:51.115285863 +0000
+@@ -32,6 +32,8 @@
+ #include <iostream>
+ #include <fstream>
+ #include <list>
++#include <cstring>
++#include <cstdlib>
+ 
+ std::string G__DLLID;
+ std::string G__MACRO;
+--- ./cint7/tool/makecint.cxx.orig	2008-05-26 10:54:04.645078613 +0000
++++ ./cint7/tool/makecint.cxx	2008-05-26 10:54:27.114359064 +0000
+@@ -32,6 +32,8 @@
+ #include <iostream>
+ #include <fstream>
+ #include <list>
++#include <cstring>
++#include <cstdlib>
+ 
+ std::string G__DLLID;
+ std::string G__MACRO;
+--- ./cintex/src/ROOTClassEnhancer.cxx.orig	2008-05-25 15:52:43.464836386 +0000
++++ ./cintex/src/ROOTClassEnhancer.cxx	2008-05-25 15:53:02.765936293 +0000
+@@ -32,6 +32,7 @@
+ #undef  G__DICTIONARY
+ 
+ #include <sstream>
++#include <memory>
+ 
+ #if ROOT_VERSION_CODE >= ROOT_VERSION(5,1,1)
+ #include "TVirtualIsAProxy.h"
+--- ./cont/src/TObjArray.cxx.orig	2008-05-25 08:43:10.644314911 +0000
++++ ./cont/src/TObjArray.cxx	2008-05-25 08:43:38.361894446 +0000
+@@ -28,6 +28,7 @@
+ #include "TObjArray.h"
+ #include "TError.h"
+ #include "TROOT.h"
++#include <cstdlib>
+ 
+ ClassImp(TObjArray)
+ 
+--- ./eg/src/TDatabasePDG.cxx.orig	2008-05-25 10:20:38.801837450 +0000
++++ ./eg/src/TDatabasePDG.cxx	2008-05-25 10:20:53.242660386 +0000
+@@ -17,7 +17,7 @@
+ #include "TDatabasePDG.h"
+ #include "TDecayChannel.h"
+ #include "TParticlePDG.h"
+-
++#include <cstdlib>
+ 
+ ////////////////////////////////////////////////////////////////////////
+ //
+--- ./eve/src/TEveTrans.cxx.orig	2008-05-25 14:25:05.515059385 +0000
++++ ./eve/src/TEveTrans.cxx	2008-05-25 14:25:19.659865451 +0000
+@@ -41,6 +41,7 @@
+ #include "TClass.h"
+ 
+ #include <ctype.h>
++#include <iostream>
+ 
+ #define F00  0
+ #define F01  4
+--- ./gdml/src/TGDMLParse.cxx.orig	2008-05-25 17:42:19.033722903 +0000
++++ ./gdml/src/TGDMLParse.cxx	2008-05-25 17:43:16.480996636 +0000
+@@ -78,6 +78,7 @@
+ 
+ ****************************************************************************/
+ 
++#include <cstdlib>
+ #include "TGeoMatrix.h"
+ #include "TXMLEngine.h"
+ #include "TGeoVolume.h"
+--- ./ged/src/TStyleDialog.cxx.orig	2008-05-25 10:15:22.252869328 +0000
++++ ./ged/src/TStyleDialog.cxx	2008-05-25 10:15:35.321614073 +0000
+@@ -32,6 +32,7 @@
+ #include <TStyle.h>
+ #include <TVirtualPad.h>
+ #include <TVirtualMutex.h>
++#include <cstdlib>
+ 
+ ClassImp(TStyleDialog)
+ 
+--- ./geompainter/src/TGeoChecker.cxx.orig	2008-05-25 10:25:11.005349444 +0000
++++ ./geompainter/src/TGeoChecker.cxx	2008-05-25 10:25:27.546292059 +0000
+@@ -88,6 +88,7 @@
+ #include "TBuffer3D.h"
+ #include "TBuffer3DTypes.h"
+ #include "TMath.h"
++#include <cstdlib>
+ 
+ // statics and globals
+ 
+--- ./gl/src/TX11GL.cxx.orig	2008-05-25 14:19:39.424476542 +0000
++++ ./gl/src/TX11GL.cxx	2008-05-25 14:19:58.021536328 +0000
+@@ -11,7 +11,7 @@
+ 
+ #include <deque>
+ #include <map>
+-
++#include <cstdlib>
+ #include "TVirtualViewer3D.h"
+ #include "TVirtualX.h"
+ #include "TGLViewer.h"
+@@ -521,7 +521,7 @@
+          char *dest = ctx.fXImage->data;
+          const UChar_t *src = &ctx.fBUBuffer[ctx.fW * 4 * (ctx.fH - 1)];
+          for (UInt_t i = 0, e = ctx.fH; i < e; ++i) {
+-            std::memcpy(dest, src, ctx.fW * 4);
++            memcpy(dest, src, ctx.fW * 4);
+             dest += ctx.fW * 4;
+             src -= ctx.fW * 4;
+          }
+--- ./graf/src/TGraph.cxx.orig	2008-05-25 09:26:57.835797472 +0000
++++ ./graf/src/TGraph.cxx	2008-05-25 09:27:09.664471550 +0000
+@@ -10,6 +10,7 @@
+  *************************************************************************/
+ 
+ #include <string.h>
++#include <cstdlib>
+ 
+ #include "Riostream.h"
+ #include "TROOT.h"
+--- ./graf/src/TMultiGraph.cxx.orig	2008-05-25 09:27:21.449143120 +0000
++++ ./graf/src/TMultiGraph.cxx	2008-05-25 09:27:35.985971527 +0000
+@@ -20,6 +20,7 @@
+ #include "TMath.h"
+ 
+ #include <ctype.h>
++#include <cstdlib>
+ 
+ extern void H1LeastSquareSeqnd(Int_t n, Double_t *a, Int_t idim, Int_t &ifail, Int_t k, Double_t *b);
+ 
+--- ./gui/inc/TGFSContainer.h.orig	2008-05-25 09:37:07.946565703 +0000
++++ ./gui/inc/TGFSContainer.h	2008-05-25 09:37:22.427390919 +0000
+@@ -12,6 +12,7 @@
+ #ifndef ROOT_TGFSContainer
+ #define ROOT_TGFSContainer
+ 
++#include <cstdlib>
+ 
+ //////////////////////////////////////////////////////////////////////////
+ //                                                                      //
+--- ./gui/src/TGCanvas.cxx.orig	2008-05-25 09:33:15.625326471 +0000
++++ ./gui/src/TGCanvas.cxx	2008-05-25 09:33:38.994658213 +0000
+@@ -68,7 +68,7 @@
+ #include "TKeyMapFile.h"
+ #include "TGDNDManager.h"
+ #include "Riostream.h"
+-
++#include <cstdlib>
+ 
+ TGGC *TGContainer::fgLineGC = 0;
+ 
+--- ./gui/src/TGFileBrowser.cxx.orig	2008-05-25 09:38:24.270915180 +0000
++++ ./gui/src/TGFileBrowser.cxx	2008-05-25 09:38:38.427721931 +0000
+@@ -37,6 +37,7 @@
+ #include "Getline.h"
+ #include <time.h>
+ #include <string.h>
++#include <cstdlib>
+ 
+ #include "TGFileBrowser.h"
+ #include "TRootBrowser.h"
+--- ./gui/src/TGFont.cxx.orig	2008-05-25 09:39:31.914769984 +0000
++++ ./gui/src/TGFont.cxx	2008-05-25 09:39:51.429168201 +0000
+@@ -40,6 +40,8 @@
+ #include "TObjString.h"
+ #include "TGWidget.h"
+ #include <errno.h>
++#include <cstdlib>
++#include <climits>
+ 
+ #include "Riostream.h"
+ #include "TROOT.h"
+--- ./gui/src/TGFontDialog.cxx.orig	2008-05-25 09:40:59.463015168 +0000
++++ ./gui/src/TGFontDialog.cxx	2008-05-25 09:41:13.344862645 +0000
+@@ -28,7 +28,7 @@
+ #include "TGLabel.h"
+ #include "TGListBox.h"
+ #include "TGComboBox.h"
+-
++#include <cstdlib>
+ 
+ 
+ enum EFontDialog {
+--- ./gui/src/TGListBox.cxx.orig	2008-05-25 09:44:07.356365781 +0000
++++ ./gui/src/TGListBox.cxx	2008-05-25 09:44:23.409280584 +0000
+@@ -45,7 +45,7 @@
+ #include "TGResourcePool.h"
+ #include "TSystem.h"
+ #include "Riostream.h"
+-
++#include <cstdlib>
+ 
+ const TGFont *TGTextLBEntry::fgDefaultFont = 0;
+ TGGC         *TGTextLBEntry::fgDefaultGC = 0;
+--- ./gui/src/TGPicture.cxx.orig	2008-05-25 09:51:57.143137403 +0000
++++ ./gui/src/TGPicture.cxx	2008-05-25 09:52:14.584131309 +0000
+@@ -38,6 +38,7 @@
+ #include "TGWindow.h"
+ #include "TVirtualX.h"
+ #include "TImage.h"
++#include <cstdlib>
+ 
+ TGGC *TGSelectedPicture::fgSelectedGC = 0;
+ 
+--- ./gui/src/TGTripleSlider.cxx.orig	2008-05-25 10:10:41.092846931 +0000
++++ ./gui/src/TGTripleSlider.cxx	2008-05-25 10:10:55.553671007 +0000
+@@ -66,6 +66,7 @@
+ #include "TGPicture.h"
+ #include "Riostream.h"
+ #include "TSystem.h"
++#include <cstdlib>
+ 
+ ClassImp(TGTripleVSlider)
+ ClassImp(TGTripleHSlider)
+--- ./guihtml/src/TGHtmlBrowser.cxx.orig	2008-05-25 11:24:03.352261093 +0000
++++ ./guihtml/src/TGHtmlBrowser.cxx	2008-05-25 11:26:01.675003922 +0000
+@@ -9,6 +9,7 @@
+  * For the list of contributors see $ROOTSYS/README/CREDITS.             *
+  *************************************************************************/
+ 
++#include <cstdlib>
+ #include "TROOT.h"
+ #include "TApplication.h"
+ #include "TSystem.h"
+--- ./guihtml/src/TGHtmlIndex.cxx.orig	2008-05-25 11:25:16.760444387 +0000
++++ ./guihtml/src/TGHtmlIndex.cxx	2008-05-25 11:25:35.581516939 +0000
+@@ -35,6 +35,7 @@
+ 
+ #include <ctype.h>
+ #include <string.h>
++#include <cstdlib>
+ 
+ #include "TGHtml.h"
+ 
+--- ./hist/src/TGraph2D.cxx.orig	2008-05-25 09:18:31.516888891 +0000
++++ ./hist/src/TGraph2D.cxx	2008-05-25 09:19:08.553054573 +0000
+@@ -20,6 +20,7 @@
+ #include "TVirtualPad.h"
+ #include "TVirtualFitter.h"
+ #include "TClass.h"
++#include <cstdlib>
+ 
+ ClassImp(TGraph2D)
+ 
+--- ./html/src/TDocDirective.cxx.orig	2008-05-25 10:18:34.367817335 +0000
++++ ./html/src/TDocDirective.cxx	2008-05-25 10:18:48.938177793 +0000
+@@ -18,6 +18,7 @@
+ #include "TVirtualMutex.h"
+ #include <fstream>
+ #include <sstream>
++#include <cstdlib>
+ 
+ //______________________________________________________________________________
+ //
+--- ./html/src/TDocOutput.cxx.orig	2008-05-25 10:19:54.305206711 +0000
++++ ./html/src/TDocOutput.cxx	2008-05-25 10:20:08.882745853 +0000
+@@ -28,6 +28,7 @@
+ #include <list>
+ #include <set>
+ #include <sstream>
++#include <cstdlib>
+ 
+ namespace {
+ 
+--- ./io/src/TArchiveFile.cxx.orig	2008-05-25 08:50:00.030511713 +0000
++++ ./io/src/TArchiveFile.cxx	2008-05-25 08:50:15.595398705 +0000
+@@ -25,7 +25,7 @@
+ #include "TObjString.h"
+ #include "TError.h"
+ #include "TUrl.h"
+-
++#include <cstdlib>
+ 
+ ClassImp(TArchiveFile)
+ 
+--- ./io/src/TContainerConverters.cxx.orig	2008-05-25 08:51:09.186452685 +0000
++++ ./io/src/TContainerConverters.cxx	2008-05-25 08:51:27.199479189 +0000
+@@ -23,6 +23,7 @@
+ #include "TError.h"
+ #include "TGenCollectionStreamer.h"
+ #include "TClassStreamer.h"
++#include <cstdlib>
+ 
+ namespace {
+    const Int_t  kMapOffset = 2;
+--- ./main/src/pmain.cxx.orig	2008-05-25 18:14:20.624507431 +0000
++++ ./main/src/pmain.cxx	2008-05-25 18:14:33.073216842 +0000
+@@ -18,6 +18,7 @@
+ //////////////////////////////////////////////////////////////////////////
+ #include <stdio.h>
+ #include <errno.h>
++#include <cstdlib>
+ 
+ #ifdef WIN32
+ #include <io.h>
+--- ./main/src/hadd.cxx.orig	2008-05-26 10:41:56.074140838 +0000
++++ ./main/src/hadd.cxx	2008-05-26 10:42:21.211573339 +0000
+@@ -59,6 +59,7 @@
+ 
+ #include "RConfig.h"
+ #include <string>
++#include <cstdlib>
+ #include "TChain.h"
+ #include "TFile.h"
+ #include "THashList.h"
+--- ./math/src/TRandom1.cxx.orig	2008-05-25 08:43:53.014729463 +0000
++++ ./math/src/TRandom1.cxx	2008-05-25 08:48:16.172593187 +0000
+@@ -19,6 +19,7 @@
+ #include "TRandom1.h"
+ #include "TRandom3.h"
+ #include "TMath.h"
++#include <cstdlib>
+ 
+ // Number of instances with automatic seed selection
+ int TRandom1::fgNumEngines = 0;
+--- ./mathmore/src/GSLRndmEngines.cxx.orig	2008-05-25 15:06:34.176639662 +0000
++++ ./mathmore/src/GSLRndmEngines.cxx	2008-05-25 15:06:51.937651805 +0000
+@@ -34,6 +34,7 @@
+ // need to be included later
+ #include <time.h>
+ #include <cassert>
++#include <cstdlib>
+ 
+ #include "gsl/gsl_rng.h"
+ #include "gsl/gsl_randist.h"
+--- ./matrix/src/TMatrixTBase.cxx.orig	2008-05-25 09:13:03.646204606 +0000
++++ ./matrix/src/TMatrixTBase.cxx	2008-05-25 09:14:18.674480223 +0000
+@@ -207,6 +207,7 @@
+ #include "TROOT.h"
+ #include "TClass.h"
+ #include "TMath.h"
++#include <climits>
+ 
+ Int_t gMatrixCheck = 1;
+ 
+--- ./minuit2/src/MnUserTransformation.cxx.orig	2008-05-25 15:13:19.005328722 +0000
++++ ./minuit2/src/MnUserTransformation.cxx	2008-05-25 15:13:35.010240790 +0000
+@@ -11,6 +11,7 @@
+ #include "Minuit2/MnUserCovariance.h"
+ 
+ #include <algorithm>
++#include <cstdio>
+ 
+ namespace ROOT {
+ 
+--- ./mlp/src/TMLPAnalyzer.cxx.orig	2008-05-25 10:26:07.216552738 +0000
++++ ./mlp/src/TMLPAnalyzer.cxx	2008-05-25 10:26:20.093286541 +0000
+@@ -38,6 +38,7 @@
+ #include "TRegexp.h"
+ #include "TMath.h"
+ #include "Riostream.h"
++#include <cstdlib>
+ 
+ ClassImp(TMLPAnalyzer)
+ 
+--- ./mlp/src/TMultiLayerPerceptron.cxx.orig	2008-05-25 10:27:02.107680805 +0000
++++ ./mlp/src/TMultiLayerPerceptron.cxx	2008-05-25 10:27:24.544959433 +0000
+@@ -242,6 +242,7 @@
+ #include "TLine.h"
+ #include "TText.h"
+ #include "TObjString.h"
++#include <cstdlib>
+ 
+ ClassImp(TMultiLayerPerceptron)
+ 
+--- ./mysql/src/TMySQLStatement.cxx.orig	2008-05-25 14:27:19.826713370 +0000
++++ ./mysql/src/TMySQLStatement.cxx	2008-05-25 14:27:40.607897622 +0000
+@@ -21,6 +21,7 @@
+ #include "TDataType.h"
+ #include "TDatime.h"
+ #include "snprintf.h"
++#include <cstdlib>
+ 
+ ClassImp(TMySQLStatement)
+ 
+--- ./net/src/TWebFile.cxx.orig	2008-05-25 09:12:33.080462763 +0000
++++ ./net/src/TWebFile.cxx	2008-05-25 09:12:48.141321033 +0000
+@@ -22,6 +22,7 @@
+ #include "TROOT.h"
+ #include "TSocket.h"
+ #include "Bytes.h"
++#include <cstdlib>
+ 
+ static const char *gUserAgent = "User-Agent: ROOT-TWebFile/1.0";
+ 
+--- ./newdelete/src/MemCheck.cxx.orig	2008-05-25 09:18:01.787194692 +0000
++++ ./newdelete/src/MemCheck.cxx	2008-05-25 09:18:18.764162155 +0000
+@@ -57,6 +57,7 @@
+ #include <stdio.h>
+ #include <string.h>
+ #include <signal.h>
++#include <cstdlib>
+ #include "MemCheck.h"
+ #include "TSystem.h"
+ #include "TEnv.h"
+--- ./odbc/src/TODBCStatement.cxx.orig	2008-05-25 14:43:38.376313784 +0000
++++ ./odbc/src/TODBCStatement.cxx	2008-05-25 14:43:53.429171597 +0000
+@@ -24,6 +24,7 @@
+ #include "snprintf.h"
+ #include "Riostream.h"
+ 
++#include <cstdlib>
+ #include <sqlext.h>
+ 
+ #define kSqlTime      123781
+--- ./proof/src/TCondor.cxx.orig	2008-05-25 11:19:42.985423633 +0000
++++ ./proof/src/TCondor.cxx	2008-05-25 11:20:00.374414575 +0000
+@@ -28,6 +28,7 @@
+ #include "Riostream.h"
+ #include "TEnv.h"
+ #include "TClass.h"
++#include <cstdlib>
+ 
+ ClassImp(TCondorSlave)
+ ClassImp(TCondor)
+--- ./proof/src/TProof.cxx.orig	2008-05-25 11:20:29.484073440 +0000
++++ ./proof/src/TProof.cxx	2008-05-25 11:20:41.060733156 +0000
+@@ -22,6 +22,7 @@
+ 
+ #include <fcntl.h>
+ #include <errno.h>
++#include <cstdlib>
+ #ifdef WIN32
+ #   include <io.h>
+ #   include <sys/stat.h>
+--- ./proof/src/TProofServ.cxx.orig	2008-05-25 11:21:04.342059883 +0000
++++ ./proof/src/TProofServ.cxx	2008-05-25 11:21:17.246795282 +0000
+@@ -23,7 +23,7 @@
+ #include "RConfigure.h"
+ #include "RConfig.h"
+ #include "Riostream.h"
+-
++#include <cstdlib>
+ #ifdef WIN32
+    #include <io.h>
+    typedef long off_t;
+--- ./proof/src/TSlave.cxx.orig	2008-05-25 11:21:49.988661135 +0000
++++ ./proof/src/TSlave.cxx	2008-05-25 11:22:56.160432049 +0000
+@@ -20,6 +20,7 @@
+ //                                                                      //
+ //////////////////////////////////////////////////////////////////////////
+ 
++#include <cstdlib>
+ #include "RConfigure.h"
+ #include "TApplication.h"
+ #include "TSlave.h"
+--- ./reflex/src/DataMember.cxx.orig	2008-05-25 14:49:19.567757176 +0000
++++ ./reflex/src/DataMember.cxx	2008-05-25 14:50:02.166184722 +0000
+@@ -23,7 +23,7 @@
+ 
+ #include "Reflex/Tools.h"
+ #include "Class.h"
+-
++#include <cstring>
+ 
+ //-------------------------------------------------------------------------------
+ ROOT::Reflex::DataMember::DataMember( const char *  nam,
+--- ./reflex/src/PluginFactoryMap.cxx.orig	2008-05-25 14:58:58.622679122 +0000
++++ ./reflex/src/PluginFactoryMap.cxx	2008-05-25 15:00:31.051946365 +0000
+@@ -21,6 +21,7 @@
+ #include <vector>
+ #include <map>
+ #include <set>
++#include <cstring>
+ 
+ using namespace ROOT::Reflex;
+ using namespace std;
+--- ./reflex/src/Tools.cxx.orig	2008-05-25 15:02:11.333661095 +0000
++++ ./reflex/src/Tools.cxx	2008-05-25 15:02:22.654306221 +0000
+@@ -13,6 +13,7 @@
+ #define REFLEX_BUILD
+ #endif
+ 
++#include <cstring>
+ #include "Reflex/Tools.h"
+ 
+ #include "Reflex/Kernel.h"
+--- ./sessionviewer/src/TSessionViewer.cxx.orig	2008-05-25 11:23:25.334094561 +0000
++++ ./sessionviewer/src/TSessionViewer.cxx	2008-05-25 11:23:39.210885354 +0000
+@@ -18,6 +18,7 @@
+ //                                                                      //
+ //////////////////////////////////////////////////////////////////////////
+ 
++#include <cstdlib>
+ #include "TApplication.h"
+ #include "TROOT.h"
+ #include "THashList.h"
+--- ./smatrix/inc/Math/Expression.h.orig	2008-05-25 10:33:42.434494130 +0000
++++ ./smatrix/inc/Math/Expression.h	2008-05-25 10:33:55.707250502 +0000
+@@ -45,6 +45,7 @@
+ 
+ 
+ #include <iomanip>
++#include <iostream>
+ 
+ namespace ROOT { 
+ 
+--- ./sql/inc/TSQLFile.h.orig	2008-05-25 10:36:17.827349464 +0000
++++ ./sql/inc/TSQLFile.h	2008-05-25 10:36:39.340575433 +0000
+@@ -12,6 +12,7 @@
+ #ifndef ROOT_TSQLFile
+ #define ROOT_TSQLFile
+ 
++#include <cstdlib>
+ 
+ /////////////////////////////////////////////////////////////////////////
+ //                                                                     //
+--- ./tmva/src/BinarySearchTree.cxx.orig	2008-05-25 10:41:43.737922050 +0000
++++ ./tmva/src/BinarySearchTree.cxx	2008-05-25 10:42:07.063251284 +0000
+@@ -66,6 +66,7 @@
+ #ifndef ROOT_TMVA_BinarySearchTree
+ #include "TMVA/BinarySearchTree.h"
+ #endif
++#include <algorithm>
+ 
+ ClassImp(TMVA::BinarySearchTree)
+ 
+--- ./tmva/src/MethodANNBase.cxx.orig	2008-05-25 10:42:47.477554364 +0000
++++ ./tmva/src/MethodANNBase.cxx	2008-05-25 10:43:04.486523650 +0000
+@@ -31,6 +31,7 @@
+ 
+ #include "TString.h"
+ #include <vector>
++#include <cstdlib>
+ #include "TTree.h"
+ #include "TDirectory.h"
+ #include "Riostream.h"
+--- ./tmva/src/MethodCFMlpANN.cxx.orig	2008-05-25 10:43:52.501259854 +0000
++++ ./tmva/src/MethodCFMlpANN.cxx	2008-05-25 10:43:27.107812764 +0000
+@@ -65,6 +65,7 @@
+ 
+ #include <iostream>
+ #include <string>
++#include <cstdlib>
+ 
+ #include "Riostream.h"
+ #include "TMath.h"
+--- ./tmva/src/MethodCFMlpANN_Utils.cxx.orig	2008-05-25 10:44:57.164944827 +0000
++++ ./tmva/src/MethodCFMlpANN_Utils.cxx	2008-05-25 10:45:09.757662445 +0000
+@@ -58,6 +58,7 @@
+ //_______________________________________________________________________
+ 
+ #include <iostream>
++#include <cstdlib>
+ 
+ #include "TMVA/MethodCFMlpANN_Utils.h"
+ #include "TMVA/Timer.h"
+--- ./tmva/src/MethodCuts.cxx.orig	2008-05-25 10:45:47.783829433 +0000
++++ ./tmva/src/MethodCuts.cxx	2008-05-25 10:46:04.640790057 +0000
+@@ -91,6 +91,7 @@
+ //_______________________________________________________________________
+ 
+ #include <iostream>
++#include <cstdlib>
+ 
+ #include <stdio.h>
+ #include "time.h"
+--- ./tmva/src/MethodFDA.cxx.orig	2008-05-25 10:46:38.050693979 +0000
++++ ./tmva/src/MethodFDA.cxx	2008-05-25 10:46:50.347720956 +0000
+@@ -33,6 +33,7 @@
+ // Algorithm, Simulated Annealing, MINUIT and combinations of these.    //
+ //_______________________________________________________________________
+ 
++#include <cstdlib>
+ #include "Riostream.h"
+ #include "TList.h"
+ #include "TFormula.h"
+--- ./tmva/src/MethodKNN.cxx.orig	2008-05-25 10:47:22.277569444 +0000
++++ ./tmva/src/MethodKNN.cxx	2008-05-25 10:47:34.772031819 +0000
+@@ -33,6 +33,7 @@
+ 
+ // C++
+ #include <string>
++#include <cstdlib>
+ 
+ // ROOT
+ #include "TFile.h"
+--- ./tmva/src/MethodPDERS.cxx.orig	2008-05-25 10:48:06.849814742 +0000
++++ ./tmva/src/MethodPDERS.cxx	2008-05-25 10:48:24.949792717 +0000
+@@ -66,6 +66,7 @@
+ //_______________________________________________________________________
+ 
+ #include <assert.h>
++#include <algorithm>
+ 
+ #include "TFile.h"
+ #include "TObjString.h"
+--- ./tmva/src/MethodSeedDistance.cxx.orig	2008-05-25 10:48:56.188225273 +0000
++++ ./tmva/src/MethodSeedDistance.cxx	2008-05-25 10:49:11.417093116 +0000
+@@ -29,6 +29,7 @@
+ End_Html */
+ //_______________________________________________________________________
+ 
++#include <cstdlib>
+ #include "Riostream.h"
+ #include "TList.h"
+ #include "TFormula.h"
+--- ./tmva/src/MsgLogger.cxx.orig	2008-05-25 10:49:50.563323933 +0000
++++ ./tmva/src/MsgLogger.cxx	2008-05-25 10:50:03.972088055 +0000
+@@ -30,6 +30,7 @@
+ #include <iomanip>
+ #include <iostream>
+ #include <string>
++#include <cstdlib>
+ 
+ using std::string;
+ using std::cout;
+--- ./tree/src/TBufferSQL.cxx.orig	2008-05-25 09:24:39.647922594 +0000
++++ ./tree/src/TBufferSQL.cxx	2008-05-25 09:24:53.280699482 +0000
+@@ -18,6 +18,7 @@
+ //////////////////////////////////////////////////////////////////////////
+ 
+ #include <stdio.h>
++#include <cstdlib>
+ #include "Riostream.h"
+ #include "TError.h"
+ 
+--- ./tree/src/TTreeSQL.cxx.orig	2008-05-25 09:25:53.536133243 +0000
++++ ./tree/src/TTreeSQL.cxx	2008-05-25 09:26:05.680825330 +0000
+@@ -20,6 +20,7 @@
+ #include <Riostream.h>
+ #include <vector>
+ #include <map>
++#include <cstdlib>
+ 
+ #include "TString.h"
+ #include "TROOT.h"
+--- ./utils/src/rlibmap.cxx.orig	2008-05-24 22:33:42.550370884 +0000
++++ ./utils/src/rlibmap.cxx	2008-05-24 22:34:01.139430215 +0000
+@@ -28,6 +28,7 @@
+ #include <fcntl.h>
+ #include <string>
+ #include <vector>
++#include <cstring>
+ #ifndef WIN32
+ #   include <unistd.h>
+ #else
+--- ./xml/src/TXMLEngine.cxx.orig	2008-05-25 10:30:33.687738066 +0000
++++ ./xml/src/TXMLEngine.cxx	2008-05-25 10:30:47.300513814 +0000
+@@ -23,6 +23,7 @@
+ 
+ #include "Riostream.h"
+ #include "TString.h"
++#include <cstdlib>
+ 
+ ClassImp(TXMLEngine);
+ 
+--- ./xml/src/TXMLSetup.cxx.orig	2008-05-25 10:31:20.746419787 +0000
++++ ./xml/src/TXMLSetup.cxx	2008-05-25 10:31:38.287419392 +0000
+@@ -38,6 +38,7 @@
+ #include "TStreamerElement.h"
+ 
+ #include "Riostream.h"
++#include <cstdlib>
+ 
+ ClassImp(TXMLSetup);
+ 
diff --git a/sci-physics/root/files/root-5.18.00d-makefile.patch b/sci-physics/root/files/root-5.18.00d-makefile.patch
new file mode 100644
index 000000000000..634c99319815
--- /dev/null
+++ b/sci-physics/root/files/root-5.18.00d-makefile.patch
@@ -0,0 +1,13 @@
+--- Makefile.orig	2008-05-27 09:06:38.300582081 +0000
++++ Makefile	2008-05-27 09:07:17.946841392 +0000
+@@ -898,8 +898,8 @@
+ 	   $(INSTALLDATA) build/misc/root-help.el $(DESTDIR)$(ELISPDIR); \
+ 	   echo "Installing GDML conversion scripts in $(DESTDIR)$(LIBDIR)"; \
+ 	   $(INSTALLDATA) gdml/*.py               $(DESTDIR)$(LIBDIR); \
+-	   find $(DESTDIR)$(DATADIR) -name CVS -exec rm -rf {} \; >/dev/null 2>&1; \
+-	   find $(DESTDIR)$(DATADIR) -name .svn -exec rm -rf {} \; >/dev/null 2>&1; \
++	   find $(DESTDIR)$(LIBDIR) -name CVS -exec rm -rf {} \; >/dev/null 2>&1; \
++	   find $(DESTDIR)$(LIBDIR) -name .svn -exec rm -rf {} \; >/dev/null 2>&1; \
+ 	fi
+ 
+ uninstall:
diff --git a/sci-physics/root/files/xrootd-20071116-checksymbol.patch b/sci-physics/root/files/xrootd-20071116-checksymbol.patch
new file mode 100644
index 000000000000..e3b0bc63d22b
--- /dev/null
+++ b/sci-physics/root/files/xrootd-20071116-checksymbol.patch
@@ -0,0 +1,129 @@
+--- xrootd/configure.classic.orig	2008-05-26 15:52:33.337003344 +0000
++++ xrootd/configure.classic	2008-05-26 22:17:49.601277080 +0000
+@@ -339,7 +339,8 @@
+ 
+     # Assert that we got enough arguments
+     if test $# -ne 3 ; then
+-	echo "check_symbol: Not 3 arguments"
++	echo "check_symbol: not 3 arguments"
++        found_symbol=0
+ 	return 1
+     fi
+ 
+@@ -348,34 +349,105 @@
+     symbollib=$1  ; shift
+     symboldir=$1
+ 
++    if test "x$symbollib" = "x" ; then
++        found_symbol=0
++        return 1
++    fi
++
++    symbollib=`echo $symbollib | sed -e 's/^-l/lib/'`
++
++    if test ! "x$symboldir" = "x" ; then
++        symboldir=`echo $symboldir | sed -e 's/^-L//'`
++    fi
++
+     # Check if we got a specific argument as to where the library
+     # is to be found
+     symbolfile=$symbollib
+-    if test ! "x$symboldir" = "x" ; then
+-        symbolfile=$symboldir/$symbollib
+-        if test ! -r $symbolfile ; then
+-            for i in .a .so .lib ; do
+-                if test -r $symbolfile$i ; then
+-                    symbolfile=$symbolfile$i
+-                    break
++    exts=".so .lib"
++    if test ! "x$shared" = "xno" ; then
++	exts="$exts .a"
++    else
++	exts=".a $exts"
++    fi
++
++    usrlib="/usr/lib"
++    # look first in the lib32 directories
++    if test "x$checklib32" = "xyes" ; then
++        usrlib="/usr/lib32 $usrlib"
++    fi
++    # look first in the lib64 directories
++    if test "x$checklib64" = "xyes" ; then
++        usrlib="/usr/lib64 $usrlib"
++    fi
++    # look only in the lib64 directories
++    if test "x$checkonlylib64" = "xyes" ; then
++        usrlib="/usr/lib64"
++    fi
++    # look only in the hpux64 directories
++    if test "x$checkhpux64" = "xyes" ; then
++        usrlib="/usr/lib/hpux64"
++    fi
++
++    for d in "$symboldir" $usrlib ; do
++	echo " Checking in $d"
++	if test ! -r $d/$symbollib ; then
++	    echo "  $d/$symbollib not readable"
++	    for i in $exts ; do
++		echo "   Checking extension $i with $d/$symbollib"
++		if test -r $d/$symbollib$i ; then
++		    echo "   $d/$symbollib$i readable"
++		    symbolfile=$d/$symbollib$i
++		    break 2
+                 fi
+              done
++        else
++            echo "$d/$symbollib readable"
++            symbolfile=$d/$symbollib
++            break
+         fi
+-    fi
++    done
+ 
+     if test "x$symbolfile" = "x" || test ! -r $symbolfile ; then
+        found_symbol=0
++       echo " Symbol not found"
+        return 1
+     fi
+ 
+-    symbol_in_lib=`nm $symbolfile | grep $symbol > /dev/null 2>&1`
++    checking_msg "$symbol in $symbolfile"
++    nm $symbolfile 2>&1 | grep $symbol > /dev/null 2>&1
+     if test $? -eq 0 ; then
+         found_symbol=1
++        echo " Symbol found"
+     else
+-        found_symbol=0
++	nm $symbolfile 2>&1 | grep "no symbols" > /dev/null 2>&1
++	if test $? -eq 0 ; then
++	    echo " $symbolfile is stripped, trying a link"
++	    # stripped library - only safe test is to link against the
++	    # library!  However, we do not know what compiler to use
++	    # so we can not do the test.  Assume the symbol is in
++	    cat <<EOF > conftest.mk
++conftest:conftest.c $symbolfile
++	\$(CC) \$(CFLAGS) \$(LDFLAGS) $symbolfile \$< -o \$@
++
++conftest.c:
++	echo "extern int $symbol (); " > \$@
++	echo "int main() { $symbol (); return 0; }" >> \$@
++EOF
++	    make -f conftest.mk >> config.log 2>&1
++	    if test $? -eq 0 ; then
++		found_symbol=1
++		echo " Link OK"
++	    else
++		found_symbol=0
++		echo " Failed code was"
++		cat conftest.mk >> config.log
++	    fi
++	    rm -rf conftest.c conftest.mk conftest
++	else
++	    found_symbol=0
++	fi
+     fi
+ }
+-
+ #_____________________________________________________________________
+ guess_architecture () {
+     # Try to guess the architecture of the host system
diff --git a/sci-physics/root/files/xrootd-20071116-gcc43.patch b/sci-physics/root/files/xrootd-20071116-gcc43.patch
new file mode 100644
index 000000000000..14697d790e8b
--- /dev/null
+++ b/sci-physics/root/files/xrootd-20071116-gcc43.patch
@@ -0,0 +1,948 @@
+--- xrootd/src/Xrd/XrdConfig.cc.orig	2008-01-29 06:38:09.000000000 +0000
++++ xrootd/src/Xrd/XrdConfig.cc	2008-05-26 11:18:26.736398449 +0000
+@@ -21,7 +21,6 @@
+   
+ #include <unistd.h>
+ #include <ctype.h>
+-#include <iostream.h>
+ #include <pwd.h>
+ #include <string.h>
+ #include <stdio.h>
+@@ -29,7 +28,8 @@
+ #include <sys/resource.h>
+ #include <sys/types.h>
+ #include <sys/stat.h>
+-
++#include <iostream>
++using namespace std;
+ #include "Xrd/XrdBuffer.hh"
+ #include "Xrd/XrdConfig.hh"
+ #include "Xrd/XrdInet.hh"
+--- xrootd/src/Xrd/XrdMain.cc.orig	2007-07-31 02:23:35.000000000 +0000
++++ xrootd/src/Xrd/XrdMain.cc	2008-05-26 11:18:26.864405743 +0000
+@@ -46,13 +46,14 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <signal.h>
+ #include <stdlib.h>
+ #include <string.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <sys/param.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "Xrd/XrdBuffer.hh"
+ #include "Xrd/XrdConfig.hh"
+--- xrootd/src/Xrd/XrdTrace.hh.orig	2004-08-30 07:16:52.000000000 +0000
++++ xrootd/src/Xrd/XrdTrace.hh	2008-05-26 11:18:26.784401184 +0000
+@@ -26,7 +26,7 @@
+ 
+ #ifndef NODEBUG
+ 
+-#include <iostream.h>
++#include <iostream>
+ #include "XrdOuc/XrdOucTrace.hh"
+ 
+ #ifndef XRD_TRACE
+--- xrootd/src/XrdAcc/XrdAccConfig.cc.orig	2007-07-31 02:24:01.000000000 +0000
++++ xrootd/src/XrdAcc/XrdAccConfig.cc	2008-05-26 11:18:31.644678155 +0000
+@@ -23,13 +23,14 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <fcntl.h>
+-#include <iostream.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <time.h>
+ #include <sys/param.h>
+ #include <sys/stat.h>
+ #include <sys/types.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOuc/XrdOucLock.hh"
+ #include "XrdOuc/XrdOucEnv.hh"
+--- xrootd/src/XrdAcc/XrdAccGroups.cc.orig	2004-07-07 02:47:55.000000000 +0000
++++ xrootd/src/XrdAcc/XrdAccGroups.cc	2008-05-26 11:18:31.540672229 +0000
+@@ -15,7 +15,6 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <limits.h>
+ #include <netdb.h>
+ #include <pwd.h>
+@@ -23,6 +22,8 @@
+ #include <strings.h>
+ #include <sys/param.h>
+ #include <sys/types.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdAcc/XrdAccCapability.hh"
+ #include "XrdAcc/XrdAccGroups.hh"
+--- xrootd/src/XrdAcc/XrdAccTest.cc.orig	2007-07-31 02:24:03.000000000 +0000
++++ xrootd/src/XrdAcc/XrdAccTest.cc	2008-05-26 11:18:31.576674280 +0000
+@@ -28,7 +28,6 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <stdlib.h>
+ #include <strings.h>
+ #include <stdio.h>
+@@ -36,6 +35,8 @@
+ #include <arpa/inet.h>
+ #include <sys/param.h>
+ #include <sys/socket.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdAcc/XrdAccAuthorize.hh"
+ #include "XrdAcc/XrdAccConfig.hh"
+--- xrootd/src/XrdClient/XrdClientPhyConnection.cc.orig	2007-12-06 15:04:21.000000000 +0000
++++ xrootd/src/XrdClient/XrdClientPhyConnection.cc	2008-05-26 11:18:24.896293587 +0000
+@@ -220,14 +220,14 @@
+ 	 Error("PhyConnection",
+ 	       "Can't create reader thread: out of system resources");
+ // HELP: what do we do here
+-         std::exit(-1);
++         ::exit(-1);
+       }
+ 
+       if (fReaderthreadhandler[i]->Run(this)) {
+          Error("PhyConnection",
+                "Can't run reader thread: out of system resources. Critical error.");
+ // HELP: what do we do here
+-         std::exit(-1);
++         ::exit(-1);
+       }
+ 
+       if (fReaderthreadhandler[i]->Detach())
+--- xrootd/src/XrdCrypto/XrdCryptoAux.hh.orig	2006-09-28 22:39:57.000000000 +0000
++++ xrootd/src/XrdCrypto/XrdCryptoAux.hh	2008-05-26 11:18:29.344547078 +0000
+@@ -3,9 +3,7 @@
+ #define __CRYPTO_AUX_H__
+ 
+ #include <stdio.h>
+-#ifndef WIN32
+-#include <iostream.h>
+-#endif
++#include <iostream>
+ #include <XProtocol/XProtocol.hh>
+ 
+ /******************************************************************************/
+--- xrootd/src/XrdCrypto/XrdCryptoCipher.cc.orig	2005-06-16 12:17:17.000000000 +0000
++++ xrootd/src/XrdCrypto/XrdCryptoCipher.cc	2008-05-26 11:18:29.052530437 +0000
+@@ -19,6 +19,7 @@
+ 
+ #include <XrdCrypto/XrdCryptoAux.hh>
+ #include <XrdCrypto/XrdCryptoCipher.hh>
++using namespace std;
+ 
+ //_____________________________________________________________________________
+ bool XrdCryptoCipher::Finalize(char *, int, const char *)
+--- xrootd/src/XrdCrypto/XrdCryptoMsgDigest.cc.orig	2005-06-16 12:17:18.000000000 +0000
++++ xrootd/src/XrdCrypto/XrdCryptoMsgDigest.cc	2008-05-26 11:18:28.904522003 +0000
+@@ -18,6 +18,7 @@
+ /* ************************************************************************** */
+ 
+ #include <string.h>
++using namespace std;
+ 
+ #include <XrdCrypto/XrdCryptoAux.hh>
+ #include <XrdCrypto/XrdCryptoMsgDigest.hh>
+--- xrootd/src/XrdCrypto/XrdCryptosslTrace.hh.orig	2005-06-16 12:17:23.000000000 +0000
++++ xrootd/src/XrdCrypto/XrdCryptosslTrace.hh	2008-05-26 11:18:29.220540012 +0000
+@@ -16,7 +16,7 @@
+ 
+ #ifndef NODEBUG
+ 
+-#include <iostream.h>
++#include <iostream>
+ 
+ #define QTRACE(act) (sslTrace && (sslTrace->What & cryptoTRACE_ ## act))
+ #define PRINT(y)    {if (sslTrace) {sslTrace->Beg(epname); \
+--- xrootd/src/XrdCrypto/XrdCryptoTrace.hh.orig	2006-01-19 21:05:07.000000000 +0000
++++ xrootd/src/XrdCrypto/XrdCryptoTrace.hh	2008-05-26 11:18:29.036529526 +0000
+@@ -16,7 +16,7 @@
+ 
+ #ifndef NODEBUG
+ 
+-#include <iostream.h>
++#include <iostream>
+ 
+ #define QTRACE(act) (cryptoTrace && (cryptoTrace->What & cryptoTRACE_ ## act))
+ #define PRINT(y)    {if (cryptoTrace) {cryptoTrace->Beg(epname); \
+--- xrootd/src/XrdNet/XrdNetDNS.cc.orig	2007-07-26 15:18:18.000000000 +0000
++++ xrootd/src/XrdNet/XrdNetDNS.cc	2008-05-26 11:18:31.200652852 +0000
+@@ -24,8 +24,9 @@
+ #include <sys/socket.h>
+ #include <netinet/in.h>
+ #include <arpa/inet.h>
+-#include <iostream.h>
+ #endif
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdNet/XrdNetDNS.hh"
+ #include "XrdSys/XrdSysPlatform.hh"
+--- xrootd/src/XrdOdc/XrdOdcConfig.cc.orig	2007-07-31 02:24:52.000000000 +0000
++++ xrootd/src/XrdOdc/XrdOdcConfig.cc	2008-05-26 11:18:21.136079305 +0000
+@@ -14,7 +14,6 @@
+ 
+ #include <unistd.h>
+ #include <ctype.h>
+-#include <iostream.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <sys/param.h>
+@@ -23,6 +22,8 @@
+ #include <sys/stat.h>
+ #include <sys/un.h>
+ #include <fcntl.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOdc/XrdOdcConfig.hh"
+ #include "XrdOdc/XrdOdcMsg.hh"
+--- xrootd/src/XrdOdc/XrdOdcTrace.hh.orig	2004-08-30 07:16:55.000000000 +0000
++++ xrootd/src/XrdOdc/XrdOdcTrace.hh	2008-05-26 11:18:21.040073834 +0000
+@@ -23,7 +23,9 @@
+ 
+ #ifndef NODEBUG
+ 
+-#include <iostream.h>
++#include <iostream>
++using namespace std;
++
+ #include "XrdOuc/XrdOucTrace.hh"
+ 
+ #define QTRACE(act) OdcTrace.What & TRACE_ ## act
+--- xrootd/src/XrdOfs/XrdOfs.cc.orig	2007-11-15 22:24:14.000000000 +0000
++++ xrootd/src/XrdOfs/XrdOfs.cc	2008-05-26 11:18:32.120705283 +0000
+@@ -35,13 +35,14 @@
+ #include <string.h>
+ #include <stdio.h>
+ #include <time.h>
+-#include <iostream.h>
+ #include <netdb.h>
+ #include <stdlib.h>
+ #include <sys/param.h>
+ #include <sys/stat.h>
+ #include <sys/time.h>
+ #include <sys/types.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdVersion.hh"
+ 
+--- xrootd/src/XrdOfs/XrdOfsConfig.cc.orig	2007-10-04 01:33:34.000000000 +0000
++++ xrootd/src/XrdOfs/XrdOfsConfig.cc	2008-05-26 11:18:31.972696848 +0000
+@@ -26,13 +26,14 @@
+ #include <ctype.h>
+ #include <errno.h>
+ #include <fcntl.h>
+-#include <iostream.h>
+ #include <netdb.h>
+ #include <stdlib.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <netinet/in.h>
+ #include <sys/param.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOfs/XrdOfs.hh"
+ #include "XrdOfs/XrdOfsConfig.hh"
+--- xrootd/src/XrdOfs/XrdOfsTrace.hh.orig	2004-08-30 07:16:57.000000000 +0000
++++ xrootd/src/XrdOfs/XrdOfsTrace.hh	2008-05-26 11:18:32.028700040 +0000
+@@ -14,7 +14,7 @@
+ 
+ #ifndef NODEBUG
+ 
+-#include <iostream.h>
++#include <iostream>
+ #include "XrdOfs/XrdOfs.hh"
+ 
+ #define GTRACE(act)         OfsTrace.What & TRACE_ ## act
+--- xrootd/src/XrdOlb/XrdOlbConfig.cc.orig	2007-11-09 21:31:37.000000000 +0000
++++ xrootd/src/XrdOlb/XrdOlbConfig.cc	2008-05-26 11:18:22.924181203 +0000
+@@ -25,7 +25,6 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <fcntl.h>
+-#include <iostream.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <sys/param.h>
+@@ -34,6 +33,8 @@
+ #include <sys/types.h>
+ #include <sys/un.h>
+ #include <dirent.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "../XrdVersion.hh"
+ #include "Xrd/XrdJob.hh"
+--- xrootd/src/XrdOlb/XrdOlbProtocol.cc.orig	2007-11-09 21:31:38.000000000 +0000
++++ xrootd/src/XrdOlb/XrdOlbProtocol.cc	2008-05-26 11:18:23.088190549 +0000
+@@ -16,13 +16,14 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <signal.h>
+ #include <stdlib.h>
+ #include <string.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <sys/param.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "Xrd/XrdInet.hh"
+ #include "Xrd/XrdLink.hh"
+--- xrootd/src/XrdOlb/XrdOlbTrace.hh.orig	2007-07-31 02:25:18.000000000 +0000
++++ xrootd/src/XrdOlb/XrdOlbTrace.hh	2008-05-26 11:18:23.132193057 +0000
+@@ -26,7 +26,7 @@
+ #define XRDOLBTRACETYPE .
+ #endif
+ 
+-#include <iostream.h>
++#include <iostream>
+ #include "XrdOuc/XrdOucTrace.hh"
+ 
+ #define DEBUG(y) if (Trace XRDOLBTRACETYPE What & TRACE_Debug) TRACEX(y)
+--- xrootd/src/XrdOss/XrdOssApi.cc.orig	2007-10-04 01:34:13.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssApi.cc	2008-05-26 11:18:20.408037816 +0000
+@@ -24,7 +24,6 @@
+ #include <unistd.h>
+ #include <errno.h>
+ #include <fcntl.h>
+-#include <iostream.h>
+ #include <signal.h>
+ #include <strings.h>
+ #include <stdio.h>
+@@ -34,6 +33,8 @@
+ #ifdef __solaris__
+ #include <sys/vnode.h>
+ #endif
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdVersion.hh"
+ 
+--- xrootd/src/XrdOss/XrdOssApi.hh.orig	2007-07-31 02:25:27.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssApi.hh	2008-05-26 11:18:20.428038956 +0000
+@@ -14,7 +14,7 @@
+ 
+ #include <sys/types.h>
+ #include <errno.h>
+-#include <iostream.h>
++#include <iostream>
+ 
+ #include "XrdOss/XrdOss.hh"
+ #include "XrdOss/XrdOssCache.hh"
+--- xrootd/src/XrdOss/XrdOssCache.cc.orig	2007-07-31 02:25:28.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssCache.cc	2008-05-26 11:18:20.296031433 +0000
+@@ -15,11 +15,12 @@
+ #include <unistd.h>
+ #include <errno.h>
+ #include <strings.h>
+-#include <iostream.h>
+ #include <stdio.h>
+ #include <time.h>
+ #include <sys/types.h>
+ #include <sys/stat.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOss/XrdOssApi.hh"
+ #include "XrdOss/XrdOssCache.hh"
+--- xrootd/src/XrdOss/XrdOssConfig.cc	2007-11-09 21:32:41.000000000 +0000
++++ src/xrootd/src/XrdOss/XrdOssConfig.cc	2008-05-26 11:18:20.340033941 +0000
+@@ -27,13 +27,14 @@
+ #include <ctype.h>
+ #include <dirent.h>
+ #include <fcntl.h>
+-#include <iostream.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <sys/param.h>
+ #include <sys/resource.h>
+ #include <sys/stat.h>
+ #include <sys/types.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOss/XrdOssApi.hh"
+ #include "XrdOss/XrdOssConfig.hh"
+--- xrootd/src/XrdOss/XrdOssCreate.cc.orig	2007-08-15 00:45:11.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssCreate.cc	2008-05-26 11:18:20.272030065 +0000
+@@ -19,7 +19,6 @@
+ #include <unistd.h>
+ #include <errno.h>
+ #include <fcntl.h>
+-#include <iostream.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <sys/file.h>
+@@ -28,6 +27,8 @@
+ #if defined(__solaris__) || defined(AIX)
+ #include <sys/vnode.h>
+ #endif
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOss/XrdOssApi.hh"
+ #include "XrdOss/XrdOssConfig.hh"
+--- xrootd/src/XrdOss/XrdOssLock.cc.orig	2007-07-31 02:25:31.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssLock.cc	2008-05-26 11:18:20.140022543 +0000
+@@ -68,11 +68,12 @@
+ #include <sys/types.h>
+ #include <sys/wait.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <fcntl.h>
+ #include <limits.h>
+ #include <strings.h>
+ #include <utime.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOss/XrdOssApi.hh"
+ #include "XrdOss/XrdOssConfig.hh"
+--- xrootd/src/XrdOss/XrdOssMSS.cc.orig	2007-07-31 02:25:32.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssMSS.cc	2008-05-26 11:18:20.232027786 +0000
+@@ -16,7 +16,6 @@
+ #include <unistd.h>
+ #include <errno.h>
+ #include <strings.h>
+-#include <iostream.h>
+ #include <signal.h>
+ #include <stdio.h>
+ #include <time.h>
+@@ -29,6 +28,8 @@
+ #include <sys/socket.h>
+ #include <sys/un.h>
+ #include <sys/wait.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdNet/XrdNetOpts.hh"
+ #include "XrdNet/XrdNetSocket.hh"
+--- xrootd/src/XrdOss/XrdOssRename.cc.orig	2007-07-31 02:25:34.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssRename.cc	2008-05-26 11:18:20.356034852 +0000
+@@ -15,11 +15,12 @@
+ #include <unistd.h>
+ #include <errno.h>
+ #include <strings.h>
+-#include <iostream.h>
+ #include <limits.h>
+ #include <stdio.h>
+ #include <sys/types.h>
+ #include <sys/stat.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOss/XrdOssApi.hh"
+ #include "XrdOss/XrdOssError.hh"
+--- xrootd/src/XrdOss/XrdOssStage.cc.orig	2007-07-31 02:25:34.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssStage.cc	2008-05-26 11:18:20.316032573 +0000
+@@ -25,13 +25,14 @@
+ #include <unistd.h>
+ #include <errno.h>
+ #include <strings.h>
+-#include <iostream.h>
+ #include <signal.h>
+ #include <stdio.h>
+ #include <time.h>
+ #include <sys/types.h>
+ #include <sys/stat.h>
+ #include <sys/wait.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOss/XrdOssApi.hh"
+ #include "XrdOss/XrdOssCache.hh"
+--- xrootd/src/XrdOss/XrdOssTrace.hh.orig	2005-01-10 08:10:49.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssTrace.hh	2008-05-26 11:18:20.384036448 +0000
+@@ -24,7 +24,7 @@
+ 
+ #ifndef NODEBUG
+ 
+-#include <iostream.h>
++#include <iostream>
+ 
+ #define QTRACE(act) OssTrace.What & TRACE_ ## act
+ 
+--- xrootd/src/XrdOss/XrdOssUnlink.cc.orig	2007-08-09 01:18:46.000000000 +0000
++++ xrootd/src/XrdOss/XrdOssUnlink.cc	2008-05-26 11:18:20.216026874 +0000
+@@ -15,11 +15,12 @@
+ #include <unistd.h>
+ #include <errno.h>
+ #include <strings.h>
+-#include <iostream.h>
+ #include <limits.h>
+ #include <stdio.h>
+ #include <sys/types.h>
+ #include <sys/stat.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOss/XrdOssApi.hh"
+ #include "XrdOss/XrdOssError.hh"
+--- xrootd/src/XrdOuc/XrdOucStream.cc.orig	2008-01-14 11:25:06.000000000 +0000
++++ xrootd/src/XrdOuc/XrdOucStream.cc	2008-05-26 11:18:30.556616150 +0000
+@@ -19,15 +19,11 @@
+ #include <string.h>
+ #include <stdio.h>
+ #ifndef WIN32
+-#include <iostream.h>
+ #include <unistd.h>
+ #include <strings.h>
+ #if !defined(__linux__) && !defined(__CYGWIN__)
+ #include <sys/conf.h>
+ #endif
+-#if !defined(__macos__) && !defined(__CYGWIN__)
+-#include <stropts.h>
+-#endif
+ #include <sys/stat.h>
+ #include <sys/termios.h>
+ #include <sys/types.h>
+@@ -35,9 +31,9 @@
+ #else // WIN32
+ #include "XrdSys/XrdWin32.hh"
+ #include <process.h>
++#endif // WIN32
+ #include <iostream>
+ using namespace std;
+-#endif // WIN32
+ 
+ #include "XrdOuc/XrdOucEnv.hh"
+ #include "XrdOuc/XrdOucStream.hh"
+--- xrootd/src/XrdOuc/XrdOucTrace.hh.orig	2007-07-31 02:25:53.000000000 +0000
++++ xrootd/src/XrdOuc/XrdOucTrace.hh	2008-05-26 16:38:39.779442480 +0000
+@@ -11,13 +11,8 @@
+ /******************************************************************************/
+ 
+ //         $Id: xrootd-20071116-gcc43.patch,v 1.1 2008/05/29 18:55:34 bicatali Exp $
+-
+-#ifndef WIN32
+-#include <iostream.h>
+-#else
+ #include <iostream>
+ using namespace std;
+-#endif
+ 
+ #include "XrdSys/XrdSysError.hh"
+ 
+--- xrootd/src/XrdPosix/XrdPosix.cc.orig	2007-07-28 00:25:25.000000000 +0000
++++ xrootd/src/XrdPosix/XrdPosix.cc	2008-05-26 11:18:18.119907423 +0000
+@@ -18,7 +18,8 @@
+ #include <fcntl.h>
+ #include <unistd.h>
+ #include <sys/uio.h>
+-#include <iostream.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdPosix/XrdPosixLinkage.hh"
+ #include "XrdPosix/XrdPosixXrootd.hh"
+--- xrootd/src/XrdPosix/XrdPosixLinkage.cc.orig	2007-07-28 00:25:26.000000000 +0000
++++ xrootd/src/XrdPosix/XrdPosixLinkage.cc	2008-05-26 11:18:18.091905827 +0000
+@@ -25,7 +25,8 @@
+ #if !defined(__macos__) && !defined(__CYGWIN__)
+ #include <link.h>
+ #endif
+-#include <iostream.h>
++#include <iostream>
++using namespace std;
+ 
+ #include <errno.h>
+ #include "XrdPosix/XrdPosixLinkage.hh"
+--- xrootd/src/XrdPosix/XrdPosixPreload32.cc.orig	2007-08-07 21:28:55.000000000 +0000
++++ xrootd/src/XrdPosix/XrdPosixPreload32.cc	2008-05-26 11:18:18.095906055 +0000
+@@ -21,7 +21,8 @@
+ #include <sys/stat.h>
+ #include <sys/types.h>
+ #include <unistd.h>
+-#include <iostream.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdPosix/XrdPosixExtern.hh"
+ #include "XrdPosix/XrdPosixLinkage.hh"
+--- xrootd/src/XrdPosix/XrdPosixPreload.cc.orig	2007-07-28 00:25:27.000000000 +0000
++++ xrootd/src/XrdPosix/XrdPosixPreload.cc	2008-05-26 11:18:18.687939793 +0000
+@@ -15,7 +15,8 @@
+ #include <sys/stat.h>
+ #include <sys/types.h>
+ #include <unistd.h>
+-#include <iostream.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdPosix/XrdPosixExtern.hh"
+ #include "XrdPosix/XrdPosixLinkage.hh"
+--- xrootd/src/XrdPss/XrdPss.cc.orig	2007-07-31 02:26:01.000000000 +0000
++++ xrootd/src/XrdPss/XrdPss.cc	2008-05-26 11:18:20.772058560 +0000
+@@ -19,7 +19,6 @@
+ #include <unistd.h>
+ #include <errno.h>
+ #include <fcntl.h>
+-#include <iostream.h>
+ #include <signal.h>
+ #include <strings.h>
+ #include <stdio.h>
+@@ -29,6 +28,8 @@
+ #ifdef __solaris__
+ #include <sys/vnode.h>
+ #endif
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdVersion.hh"
+ 
+--- xrootd/src/XrdPss/XrdPssConfig.cc.orig	2007-07-31 02:26:02.000000000 +0000
++++ xrootd/src/XrdPss/XrdPssConfig.cc	2008-05-26 11:18:20.796059928 +0000
+@@ -14,7 +14,6 @@
+ 
+ #include <unistd.h>
+ #include <ctype.h>
+-#include <iostream.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <sys/param.h>
+@@ -23,6 +22,8 @@
+ #include <sys/stat.h>
+ #include <sys/un.h>
+ #include <fcntl.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdPss/XrdPss.hh"
+ #include "XrdOuc/XrdOuca2x.hh"
+--- xrootd/src/XrdPss/XrdPss.hh.orig	2007-07-31 02:26:02.000000000 +0000
++++ xrootd/src/XrdPss/XrdPss.hh	2008-05-26 11:18:20.760057876 +0000
+@@ -14,7 +14,7 @@
+ 
+ #include <sys/types.h>
+ #include <errno.h>
+-#include <iostream.h>
++#include <iostream>
+ 
+ #include "XrdOss/XrdOss.hh"
+ 
+--- xrootd/src/XrdSec/XrdSecClient.cc.orig	2007-07-26 15:18:31.000000000 +0000
++++ xrootd/src/XrdSec/XrdSecClient.cc	2008-05-26 11:18:21.460097769 +0000
+@@ -15,7 +15,6 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <netdb.h>
+ #include <stdlib.h>
+ #include <strings.h>
+@@ -25,6 +24,8 @@
+ #include <sys/socket.h>
+ #include <netinet/in.h>
+ #include <arpa/inet.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOuc/XrdOucErrInfo.hh"
+ #include "XrdSys/XrdSysPthread.hh"
+--- xrootd/src/XrdSec/XrdSecPManager.cc.orig	2006-01-26 02:02:10.000000000 +0000
++++ xrootd/src/XrdSec/XrdSecPManager.cc	2008-05-26 11:18:21.444096857 +0000
+@@ -31,7 +31,8 @@
+ #include <sys/stat.h>
+ #include <sys/types.h>
+ #include <errno.h>
+-#include <iostream.h>
++#include <iostream>
++using namespace std;
+   
+ #include "XrdSec/XrdSecInterface.hh"
+ #include "XrdSec/XrdSecPManager.hh"
+--- xrootd/src/XrdSec/XrdSecServer.cc.orig	2007-08-31 19:24:40.000000000 +0000
++++ xrootd/src/XrdSec/XrdSecServer.cc	2008-05-26 11:18:21.400094350 +0000
+@@ -16,12 +16,13 @@
+ #include <ctype.h>
+ #include <errno.h>
+ #include <fcntl.h>
+-#include <iostream.h>
+ #include <netdb.h>
+ #include <stdlib.h>
+ #include <strings.h>
+ #include <stdio.h>
+ #include <sys/param.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOuc/XrdOucEnv.hh"
+ #include "XrdSys/XrdSysError.hh"
+--- xrootd/src/XrdSec/XrdSectestClient.cc.orig	2005-03-25 08:25:59.000000000 +0000
++++ xrootd/src/XrdSec/XrdSectestClient.cc	2008-05-26 11:18:21.472098453 +0000
+@@ -20,7 +20,6 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <stdlib.h>
+ #include <strings.h>
+ #include <stdio.h>
+@@ -28,6 +27,8 @@
+ #include <arpa/inet.h>
+ #include <sys/param.h>
+ #include <sys/socket.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdSec/XrdSecInterface.hh"
+   
+--- xrootd/src/XrdSec/XrdSectestServer.cc.orig	2007-07-31 02:26:15.000000000 +0000
++++ xrootd/src/XrdSec/XrdSectestServer.cc	2008-05-26 11:18:21.412095034 +0000
+@@ -15,7 +15,6 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <stdlib.h>
+ #include <strings.h>
+ #include <stdio.h>
+@@ -23,6 +22,8 @@
+ #include <arpa/inet.h>
+ #include <sys/param.h>
+ #include <sys/socket.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOuc/XrdOucErrInfo.hh"
+ #include "XrdSys/XrdSysLogger.hh"
+--- xrootd/src/XrdSec/XrdSecTrace.hh.orig	2004-08-30 07:17:04.000000000 +0000
++++ xrootd/src/XrdSec/XrdSecTrace.hh	2008-05-26 11:18:21.412095034 +0000
+@@ -16,7 +16,7 @@
+ 
+ #ifndef NODEBUG
+ 
+-#include <iostream.h>
++#include <iostream>
+ 
+ #define QTRACE(act) SecTrace->What & TRACE_ ## act
+ 
+--- xrootd/src/XrdSeckrb5/XrdSecProtocolkrb5.cc.orig	2007-07-26 15:18:35.000000000 +0000
++++ xrootd/src/XrdSeckrb5/XrdSecProtocolkrb5.cc	2008-05-26 11:18:36.856975187 +0000
+@@ -18,7 +18,6 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <stdlib.h>
+ #include <strings.h>
+ #include <stdio.h>
+@@ -26,6 +25,8 @@
+ #include <pwd.h>
+ #include <sys/types.h>
+ #include <sys/stat.h>
++#include <iostream>
++using namespace std;
+ 
+ extern "C" {
+ #include "krb5.h"
+--- xrootd/src/XrdSecpwd/XrdSecProtocolpwd.cc.orig	2008-02-19 08:17:31.000000000 +0000
++++ xrootd/src/XrdSecpwd/XrdSecProtocolpwd.cc	2008-05-26 11:18:29.604561896 +0000
+@@ -12,7 +12,6 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <stdlib.h>
+ #include <strings.h>
+ #include <stdio.h>
+@@ -22,6 +21,8 @@
+ #include <sys/stat.h>
+ #include <fcntl.h>
+ #include <sys/times.h>
++#include <iostream>
++using namespace std;
+ 
+ // AFS support
+ #ifdef R__AFS
+--- xrootd/src/XrdSecunix/XrdSecProtocolunix.cc.orig	2007-08-02 01:41:06.000000000 +0000
++++ xrootd/src/XrdSecunix/XrdSecProtocolunix.cc	2008-05-26 11:18:25.468326185 +0000
+@@ -15,12 +15,13 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <stdlib.h>
+ #include <strings.h>
+ #include <grp.h>
+ #include <pwd.h>
+ #include <sys/types.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdOuc/XrdOucErrInfo.hh"
+ #include "XrdSys/XrdSysPthread.hh"
+--- xrootd/src/XrdSfs/XrdSfsNative.cc.orig	2007-10-04 01:34:19.000000000 +0000
++++ xrootd/src/XrdSfs/XrdSfsNative.cc	2008-05-26 11:18:36.652963561 +0000
+@@ -20,10 +20,11 @@
+ #include <memory.h>
+ #include <string.h>
+ #include <stdio.h>
+-#include <iostream.h>
+ #include <stdlib.h>
+ #include <sys/param.h>
+ #include <sys/stat.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdVersion.hh"
+ #include "XrdSys/XrdSysError.hh"
+--- xrootd/src/XrdSut/XrdSutAux.hh.orig	2008-02-19 08:17:32.000000000 +0000
++++ xrootd/src/XrdSut/XrdSutAux.hh	2008-05-26 11:18:22.096134015 +0000
+@@ -11,9 +11,7 @@
+ /*              DE-AC03-76-SFO0515 with the Department of Energy              */
+ /******************************************************************************/
+ 
+-#ifndef WIN32
+-#include <iostream.h>
+-#endif
++#include <iostream>
+ #ifndef __XPROTOCOL_H
+ #include <XProtocol/XProtocol.hh>
+ #endif
+--- xrootd/src/XrdSut/XrdSutTrace.hh.orig	2005-06-16 12:28:32.000000000 +0000
++++ xrootd/src/XrdSut/XrdSutTrace.hh	2008-05-26 11:18:22.104134471 +0000
+@@ -19,7 +19,7 @@
+ 
+ #ifndef NODEBUG
+ 
+-#include <iostream.h>
++#include <iostream>
+ 
+ #define QTRACE(act) (sutTrace && (sutTrace->What & sutTRACE_ ## act))
+ #define PRINT(y)    {if (sutTrace) {sutTrace->Beg(epname); \
+--- xrootd/src/XrdSys/XrdSysError.cc.orig	2007-07-31 02:26:44.000000000 +0000
++++ xrootd/src/XrdSys/XrdSysError.cc	2008-05-26 11:18:25.968354680 +0000
+@@ -16,25 +16,21 @@
+ #ifndef WIN32
+ #include <unistd.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #include <stdlib.h>
+ #include <stdio.h>
+ #include <string.h>
+ #include <strings.h>
+ #include <sys/types.h>
+ #include <sys/uio.h>
+-#if !defined(__macos__) && !defined(__CYGWIN__)
+-#include <stropts.h>
+-#endif
+ #else
+-#include <iostream>
+-using namespace std;
+ #include <stdlib.h>
+ #include <stdio.h>
+ #include <string.h>
+ #include <sys/types.h>
+ #include "XrdSys/XrdWin32.hh"
+ #endif
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdSys/XrdSysError.hh"
+ #include "XrdSys/XrdSysLogger.hh"
+--- xrootd/src/XrdSys/XrdSysLogger.cc.orig	2007-07-31 02:26:45.000000000 +0000
++++ xrootd/src/XrdSys/XrdSysLogger.cc	2008-05-26 11:18:25.868348981 +0000
+@@ -26,9 +26,6 @@
+ #include <strings.h>
+ #include <sys/termios.h>
+ #include <sys/uio.h>
+-#if !defined(__macos__) && !defined(__CYGWIN__)
+-#include <stropts.h>
+-#endif
+ #endif // WIN32
+ 
+ #include "XrdSys/XrdSysLogger.hh"
+--- xrootd/src/XrdSys/XrdSysPlugin.cc.orig	2007-07-31 02:26:47.000000000 +0000
++++ xrootd/src/XrdSys/XrdSysPlugin.cc	2008-05-26 11:18:25.992356048 +0000
+@@ -32,12 +32,11 @@
+ #include <strings.h>
+ #include <sys/types.h>
+ #include <errno.h>
+-#include <iostream.h>
+ #else
+ #include "XrdSys/XrdWin32.hh"
++#endif
+ #include <iostream>
+ using namespace std;
+-#endif
+   
+ #include "XrdSys/XrdSysError.hh"
+ #include "XrdSys/XrdSysPlugin.hh"
+--- xrootd/src/XrdSys/XrdSysPriv.cc.orig	2007-11-14 11:55:06.000000000 +0000
++++ xrootd/src/XrdSys/XrdSysPriv.cc	2008-05-26 11:18:25.884349893 +0000
+@@ -23,10 +23,11 @@
+ 
+ #if !defined(WINDOWS)
+ #include <stdio.h>
+-#include <iostream.h>
+ #include <unistd.h>
+ #include <pwd.h>
+ #include <errno.h>
++#include <iostream>
++using namespace std;
+ 
+ #define NOUC ((uid_t)(-1))
+ #define NOGC ((gid_t)(-1))
+--- xrootd/src/XrdSys/XrdSysXSLock.cc.orig	2007-07-31 02:26:53.000000000 +0000
++++ xrootd/src/XrdSys/XrdSysXSLock.cc	2008-05-26 16:49:42.632709871 +0000
+@@ -12,12 +12,8 @@
+ 
+ const char *XrdSysXSLockCVSID = "$Id: xrootd-20071116-gcc43.patch,v 1.1 2008/05/29 18:55:34 bicatali Exp $";
+   
+-#ifndef WIN32
+-#include <iostream.h>
+-#else
+ #include <iostream>
+ using namespace std;
+-#endif
+ 
+ #include "XrdSys/XrdSysXSLock.hh"
+ 
+--- xrootd/src/XrdXrootd/XrdXrootdConfig.cc.orig	2007-10-02 02:30:01.000000000 +0000
++++ xrootd/src/XrdXrootd/XrdXrootdConfig.cc	2008-05-26 11:18:27.808459542 +0000
+@@ -15,13 +15,14 @@
+ #include <unistd.h>
+ #include <ctype.h>
+ #include <fcntl.h>
+-#include <iostream.h>
+ #include <string.h>
+ #include <stdio.h>
+ #include <sys/param.h>
+ #include <sys/stat.h>
+ #include <sys/types.h>
+ #include <sys/un.h>
++#include <iostream>
++using namespace std;
+ 
+ #include "XrdVersion.hh"
+ 
+--- xrootd/src/XrdXrootd/XrdXrootdTrace.hh.orig	2004-08-30 07:17:08.000000000 +0000
++++ xrootd/src/XrdXrootd/XrdXrootdTrace.hh	2008-05-26 11:18:27.860462505 +0000
+@@ -28,7 +28,7 @@
+  
+ #ifndef NODEBUG
+ 
+-#include <iostream.h>
++#include <iostream>
+ #include "XrdOuc/XrdOucTrace.hh"
+ 
+ #define TRACE(act, x) \
diff --git a/sci-physics/root/root-5.18.00d.ebuild b/sci-physics/root/root-5.18.00d.ebuild
new file mode 100644
index 000000000000..ae9e4d2d8359
--- /dev/null
+++ b/sci-physics/root/root-5.18.00d.ebuild
@@ -0,0 +1,182 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-physics/root/root-5.18.00d.ebuild,v 1.1 2008/05/29 18:55:33 bicatali Exp $
+
+EAPI="1"
+inherit versionator flag-o-matic eutils toolchain-funcs qt3 qt4 fortran
+
+#DOC_PV=$(get_major_version)_$(get_version_component_range 2)
+DOC_PV=5_16
+
+DESCRIPTION="C++ data analysis framework and interpreter from CERN"
+SRC_URI="ftp://root.cern.ch/${PN}/${PN}_v${PV}.source.tar.gz
+	doc? ( ftp://root.cern.ch/root/doc/Users_Guide_${DOC_PV}.pdf )"
+HOMEPAGE="http://root.cern.ch/"
+
+SLOT="0"
+LICENSE="LGPL-2"
+KEYWORDS="~amd64 ~hppa ~sparc ~x86"
+
+IUSE="afs cern doc fftw kerberos ldap +math mysql odbc
+	pch postgres python ruby qt3 qt4 ssl +truetype xml xrootd"
+
+# libafterimage ignored, may be re-install for >=5.20
+# see https://savannah.cern.ch/bugs/?func=detailitem&item_id=30944
+#	|| ( >=media-libs/libafterimage-1.15 x11-wm/afterstep )
+RDEPEND="sys-apps/shadow
+	x11-libs/libXpm
+	media-libs/ftgl
+	dev-libs/libpcre
+	virtual/opengl
+	virtual/glu
+	math? ( >=sci-libs/gsl-1.8 )
+	afs? ( >=net-fs/openafs-1.4.7 )
+	mysql? ( virtual/mysql )
+	postgres? ( virtual/postgresql-server )
+	kerberos? ( virtual/krb5 )
+	ldap? ( net-nds/openldap )
+	qt3? ( !qt4? ( $(qt_min_version 3.3.4) ) )
+	qt4? ( || ( >=x11-libs/qt-4.3:4 x11-libs/qt-gui:4 ) )
+	fftw? ( >=sci-libs/fftw-3 )
+	python? ( dev-lang/python )
+	ruby? ( dev-lang/ruby )
+	ssl? ( dev-libs/openssl )
+	xml? ( dev-libs/libxml2 )
+	cern? ( sci-physics/cernlib )
+	odbc? ( dev-db/unixODBC )
+	truetype? ( x11-libs/libXft )"
+
+DEPEND="${RDEPEND}
+	dev-util/pkgconfig"
+
+S="${WORKDIR}/${PN}"
+
+QT4_BUILT_WITH_USE_CHECK="qt3support"
+
+pkg_setup() {
+	elog
+	elog "You may want to build ROOT with these non Gentoo extra packages:"
+	elog "AliEn, castor, Chirp, clarens, gfal, Globus, GEANT4, Monalisa, "
+	elog "Oracle, peac, PYTHIA, PYTHIA6, SapDB, SRP, Venus"
+	elog "You can use the env variable EXTRA_ECONF variable for this."
+	elog "Example, for PYTHIA, you would do: "
+	elog "EXTRA_ECONF=\"--enable-pythia --with-pythia-libdir=/usr/$(get_libdir)\""
+	elog
+	epause 7
+	if use cern; then
+		FORTRAN="gfortran g77 ifc"
+		fortran_pkg_setup
+	fi
+	use qt4 && qt4_pkg_setup
+}
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	epatch "${FILESDIR}"/${PN}-pic.patch
+	epatch "${FILESDIR}"/${PN}-5.16.00-xft.patch
+	epatch "${FILESDIR}"/${P}-gcc43.patch
+	epatch "${FILESDIR}"/${P}-makefile.patch
+	cd xrootd/src
+	local xp=xrootd-20071116
+	tar xfz ${xp}-0000.src.tgz
+	epatch "${FILESDIR}"/${xp}-checksymbol.patch
+	epatch "${FILESDIR}"/${xp}-gcc43.patch
+	tar cfz ${xp}-0000.src.tgz xrootd
+}
+
+src_compile() {
+
+	local target
+	if [[ "$(tc-getCXX)" == icc* ]]; then
+		if use amd64; then
+			target=linuxx8664icc
+		elif use x86; then
+			target=linuxicc
+		fi
+	fi
+
+	#local myfortran
+	#use cern && \
+	#	myfortran="${FORTRANC} ${FFLAGS}"
+	local myconf
+	use postgres && \
+		myconf="--with-pgsql-incdir=/usr/include/postgresql"
+
+	if use qt3 || use qt4; then
+		myconf="${myconf} --enable-qt --enable-qtgsi"
+	else
+		myconf="${myconf} --disable-qt --disable-qtgsi"
+	fi
+
+	# watch: the configure script is not the standard autotools
+	local docdir=/usr/share/doc/${PF}
+	./configure \
+		${target} \
+		--prefix=/usr \
+		--libdir=/usr/$(get_libdir)/${PN} \
+		--docdir=${docdir} \
+		--disable-builtin-afterimage \
+		--disable-builtin-freetype \
+		--disable-builtin-ftgl \
+		--disable-builtin-pcre \
+		--disable-builtin-zlib \
+		--enable-asimage \
+		--enable-astiff \
+		--enable-cintex \
+		--enable-exceptions	\
+		--enable-explicitlink \
+		--enable-gdml \
+		--enable-opengl \
+		--enable-reflex \
+		--enable-shadowpw \
+		--enable-shared	\
+		--enable-soversion \
+		--enable-table \
+		${myconf} \
+		$(use_enable afs) \
+		$(use_enable cern) \
+		$(use_enable cint7) \
+		$(use_enable fftw fftw3) \
+		$(use_enable kerberos krb5) \
+		$(use_enable ldap) \
+		$(use_enable math mathcore) \
+		$(use_enable math mathmore) \
+		$(use_enable math minuit2) \
+		$(use_enable math roofit) \
+		$(use_enable math unuran) \
+		$(use_enable mysql) \
+		$(use_enable odbc) \
+		$(use_enable pch) \
+		$(use_enable postgres pgsql) \
+		$(use_enable python) \
+		$(use_enable ruby) \
+		$(use_enable ssl) \
+		$(use_enable truetype xft) \
+		$(use_enable xml) \
+		$(use_enable xrootd) \
+		${EXTRA_ECONF} \
+		|| die "configure failed"
+
+	local myfortran
+	use cern && myfortran="F77=${FORTRANC}"
+	emake \
+		OPT="${CXXFLAGS}" \
+		OPTFLAGS="${CXXFLAGS}" \
+		${myfortran} \
+		|| die "emake failed"
+	emake cintdlls || die "emake cintdlls failed"
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "emake install failed"
+	echo "LDPATH=/usr/$(get_libdir)/root" > 99root
+	doenvd 99root || die "doenvd failed"
+
+	if use doc; then
+		einfo "Installing user's guide and ref manual"
+		insinto /usr/share/doc/${PF}
+		doins "${DISTDIR}"/Users_Guide_${DOC_PV}.pdf \
+			|| die "pdf install failed"
+	fi
+}