diff options
| -rw-r--r-- | sci-chemistry/cns/ChangeLog | 12 | ||||
| -rw-r--r-- | sci-chemistry/cns/Manifest | 18 | ||||
| -rw-r--r-- | sci-chemistry/cns/cns-1.3_p5.ebuild (renamed from sci-chemistry/cns/cns-1.3_p3.ebuild) | 14 | ||||
| -rw-r--r-- | sci-chemistry/cns/files/1.3_p5-delete.patch (renamed from sci-chemistry/cns/files/1.3_p3-delete.patch) | 0 | ||||
| -rw-r--r-- | sci-chemistry/cns/files/1.3_p5-gentoo.patch (renamed from sci-chemistry/cns/files/1.3_p3-gentoo.patch) | 0 | ||||
| -rw-r--r-- | sci-chemistry/cns/files/cns_solve_env_sh-1.3_p5 (renamed from sci-chemistry/cns/files/cns_solve_env_sh-1.3_p3) | 0 |
6 files changed, 27 insertions, 17 deletions
diff --git a/sci-chemistry/cns/ChangeLog b/sci-chemistry/cns/ChangeLog index 1d9245703d89..cb5606f769ec 100644 --- a/sci-chemistry/cns/ChangeLog +++ b/sci-chemistry/cns/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for sci-chemistry/cns -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/ChangeLog,v 1.33 2010/12/17 18:22:05 jlec Exp $ +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/ChangeLog,v 1.34 2011/02/13 12:09:12 jlec Exp $ + +*cns-1.3_p5 (13 Feb 2011) + + 13 Feb 2011; Justin Lecher <jlec@gentoo.org> +files/1.3_p5-delete.patch, + +files/1.3_p5-gentoo.patch, -files/1.3_p3-delete.patch, + -files/1.3_p3-gentoo.patch, -files/cns_solve_env_sh-1.3_p3, + -cns-1.3_p3.ebuild, +files/cns_solve_env_sh-1.3_p5, +cns-1.3_p5.ebuild: + Version Bump 17 Dec 2010; Justin Lecher <jlec@gentoo.org> files/1.2.1-gentoo.patch, cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.3_p3.ebuild, diff --git a/sci-chemistry/cns/Manifest b/sci-chemistry/cns/Manifest index 7e28d748e86f..b3f613dde106 100644 --- a/sci-chemistry/cns/Manifest +++ b/sci-chemistry/cns/Manifest @@ -9,27 +9,27 @@ AUX 1.2.1-aria2.3.patch 658 RMD160 a372156b7a783cb78c81aadae2eca5c64c9630e5 SHA1 AUX 1.2.1-gentoo.patch 2071 RMD160 99875bebe116d01d851587ce0a304d8cf015d237 SHA1 d59b5eb24f53a039b9794aca41c09f4d92640bd8 SHA256 f7e1f27e68d3b186814ec9f73a86a5ecd589c3d4c4e06b1f08a894556661fde0 AUX 1.2.1-ifort.patch 5346 RMD160 106cf7dc7b4e13674fdf34ca0fd9af78effbc84b SHA1 26ccc71740ee2539352009f730b79b2ae20b5047 SHA256 bac35147159fac06fcb3a03a4f09c56224d4ee852b86a771121d98c42f3a9c65 AUX 1.2.1-parallel.patch 641 RMD160 dffcaf7a4d7c79b9362640b64e677a7fde04ac80 SHA1 5de790cee7acf9ff4a87a61fdc866c330ef6d6f1 SHA256 7cd3312c35d2dbbd2146fdfa977f9866365c4a7be16787b1ba5d9807ff823d31 -AUX 1.3_p3-delete.patch 448 RMD160 17b6ac426c11ae1832e7edf71a954e02434a5a46 SHA1 cd6f63a167dd9392c35d06ffdd31afd086e5c146 SHA256 aa61180b60fd008e3ba445bab5a4a6b0c4634b34fc5655be94ce07dc45abe958 -AUX 1.3_p3-gentoo.patch 2581 RMD160 fba36e2bc6a3e4cef25ef726bc850cb1f214e44a SHA1 3219559e4cc48458f1a57e829cdef113b90a5f24 SHA256 510d62ecd5f98cc0d52c1bfc02cadae648885680b425b40855125e1bdd7a320f +AUX 1.3_p5-delete.patch 448 RMD160 17b6ac426c11ae1832e7edf71a954e02434a5a46 SHA1 cd6f63a167dd9392c35d06ffdd31afd086e5c146 SHA256 aa61180b60fd008e3ba445bab5a4a6b0c4634b34fc5655be94ce07dc45abe958 +AUX 1.3_p5-gentoo.patch 2581 RMD160 fba36e2bc6a3e4cef25ef726bc850cb1f214e44a SHA1 3219559e4cc48458f1a57e829cdef113b90a5f24 SHA256 510d62ecd5f98cc0d52c1bfc02cadae648885680b425b40855125e1bdd7a320f AUX cns_solve_env_sh 7070 RMD160 4104b22476a61a80c7adae8a363da1dd4ab4f136 SHA1 30ba978f4862fd94d9fa939cbb7c3eb55ece46cd SHA256 da571cba2a2244e571870b1783fd6cdce1b595e14234cfb43011e9e9eb50151c -AUX cns_solve_env_sh-1.3_p3 7332 RMD160 eee19d64dc863e434159994282a78d8d576adf62 SHA1 050de938d0c0b4d1e497b03ff196416e416a0da7 SHA256 88127d99380544e502dfe3b3a7788102a7f6b30e7245b26e5e204b8b611bbc1d +AUX cns_solve_env_sh-1.3_p5 7332 RMD160 eee19d64dc863e434159994282a78d8d576adf62 SHA1 050de938d0c0b4d1e497b03ff196416e416a0da7 SHA256 88127d99380544e502dfe3b3a7788102a7f6b30e7245b26e5e204b8b611bbc1d DIST aria2.3.1.tar.gz 1833973 RMD160 f2ee0bfc7e3164b5c34c81abb74256c5d76f53d7 SHA1 b257094bdaf6ba5b64645b8251d9243654e6d0fc SHA256 cc45ed2d66182cf0ee197a7cf3bc7edd8d5043d95cdcd19e1cec9aeb82c2fdbc DIST cns_solve_1.1_basic_inputs.tar.gz 5049767 RMD160 eb5686a006d53cf269456eaecd7507842c8a10eb SHA1 255e7c5170168f9e032ef9e84a870eddf176f4ce SHA256 916d86d96159bd945a3b05e26c71af0cc6097234776385630f618fa2641cf3eb DIST cns_solve_1.1_data.tar.gz 18770504 RMD160 a18470f31fa6213e817dadf3c3c56231ebce9e63 SHA1 3eaae5ecd1df14412083af8a31a6e3f7b14c4753 SHA256 da59213013b845ca357decfc11337c7dfdb3134bd012c710291c66e8febdbb37 DIST cns_solve_1.1_test.tar.gz 2852870 RMD160 2f7e7b5ed4e603b2459944a8991829d1361315b5 SHA1 c50587cf3fdfcb1266d13dbd689a9b8b094fb681 SHA256 c5d049596cca4f6985b0b4997f4fa62345d2c111b8fab534918829ade1899a23 DIST cns_solve_1.21_all-mp.tar.gz 32748040 RMD160 0da9c1858e858474a8798149b7692b9e097adc9e SHA1 3ba32a6622b55dfff397b6844e8b8a594124a482 SHA256 7ab464e20932eb024ba6378738da77a4a03642d63b0ca9772b612a7cf27baec1 DIST cns_solve_1.21_all.tar.gz 32739912 RMD160 ab763373923264497d1ccb507cab23b2e1af9826 SHA1 93059805e14f0482cf58755daecc52cf97863215 SHA256 a581c6a0e9e5ffd45f025520959921d7ba91bb5d1e6569f1c81e709bb6f87c81 -DIST cns_solve_1.3_all.tar.gz 61213314 RMD160 56905f3d94f584cace42247c5f68b214fb03a788 SHA1 32fee543da1be60f0be98b8895be237398dc5433 SHA256 4cc06d70b5a4c1904e094409986f763ba14c3c24a516c2fba052d931c6e9ecd9 +DIST cns_solve_1.3_all.tar.gz 61221912 RMD160 6bce0ddeb04651223be46c0d94504d57da2b3e60 SHA1 51d069b8799d574b2d6124474ba8bcd1655f237e SHA256 9f7e38575d101870cf87a23a1bbaac378ed2cf60a9fada71868a10e4cbf6e1e2 EBUILD cns-1.1.ebuild 3717 RMD160 ae93fd6f7d98f712bfe9a33575d4b9e2ba968474 SHA1 4207e83d89243dfe4ad7de9fbf041580c3280376 SHA256 1ddaf3295413b4b283c8ca5f46a99db13c1cefa465f3fab3440681aa8471e001 EBUILD cns-1.2.1-r5.ebuild 6493 RMD160 01f0a61909f7b1c3967f199712b274cee74ea8c2 SHA1 5f5d1d872f67e89475a3d9e3d6169178e04403c8 SHA256 6d4d6e56e413d140faf28f4643c92c7f20f9ad98e6b1530b518845843d29b190 EBUILD cns-1.2.1.ebuild 5590 RMD160 10fbaaed0fbb8f55f7cb3583317c497d159ecd47 SHA1 bba91ab33b4247e7c21093bb69db9bc091182566 SHA256 6d83ff92189aaf220758bea97402979b3d10bc45895a26643da4b931ec641e6a -EBUILD cns-1.3_p3.ebuild 5681 RMD160 1a2cd4e826ce4023f222cef0d01f940edaf9a3c9 SHA1 7fe3a7fa8b13cccb01507a3d2931a7f9f63d2136 SHA256 3cfd16498390324b82ebba6a93ce9a83ce2005a9ded5bee6a8257116d815dc8a -MISC ChangeLog 6124 RMD160 757eb549d92b79d321cb8764ac7ed1b21c6d63f5 SHA1 53f6833e31baf3472b3b48bcafcd4bf3c737d673 SHA256 07eb3ef152299668c9ea1319af8fa86287872646bcb7480929d60ab76925df4d +EBUILD cns-1.3_p5.ebuild 5787 RMD160 147b61b60712970aee73f64bfcf3361576eb3255 SHA1 859694f279be95201e96af7d2596665cdfc533b5 SHA256 e882076639e54e880688370034231df363c7a0ddd7981b5caf588c041dbb4cce +MISC ChangeLog 6436 RMD160 c7ada96f32521537369e05a696241bf972dc8183 SHA1 75ea1b78d691506c24c81e75755e05ce93759034 SHA256 b3b3c0aad35025234d38efc2ca1cbea56b2242954930415664fe000cbc7bb2de MISC metadata.xml 302 RMD160 d60d9cd875115eaba68ad4b504bff76b39a136b0 SHA1 ecdd8feeea2de489927403f1941acfc582c17222 SHA256 a374144760a8ac1f72b1c625c41f98cee3f74511c964133bda119da580664c50 -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.16 (GNU/Linux) -iEYEARECAAYFAk0LqlMACgkQgAnW8HDreRYQrgCgoQDmi96N/GamRRg7SpfwSg8o -wLcAoICj7/FW3yZm3M70RGVHbM80FX/p -=YbGV +iEYEARECAAYFAk1Xye4ACgkQgAnW8HDreRa2OwCgq/Hd+JAeHe0UqeGhLChG369p +vigAn3KP89mWpoM4x6L2IkaTjnkQyMGS +=Oky3 -----END PGP SIGNATURE----- diff --git a/sci-chemistry/cns/cns-1.3_p3.ebuild b/sci-chemistry/cns/cns-1.3_p5.ebuild index 2fa4be0ab553..a2833808dd5f 100644 --- a/sci-chemistry/cns/cns-1.3_p3.ebuild +++ b/sci-chemistry/cns/cns-1.3_p5.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2010 Gentoo Foundation +# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/cns-1.3_p3.ebuild,v 1.4 2010/12/17 18:22:05 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/cns-1.3_p5.ebuild,v 1.1 2011/02/13 12:09:12 jlec Exp $ EAPI="3" @@ -12,7 +12,7 @@ MY_P="${MY_PN}_${MY_PV}" DESCRIPTION="Crystallography and NMR System" HOMEPAGE="http://cns.csb.yale.edu/" -SRC_URI="${MY_P/p3}_all.tar.gz +SRC_URI="${MY_P/p5}_all.tar.gz aria? ( aria2.3.1.tar.gz )" SLOT="0" @@ -24,7 +24,7 @@ RDEPEND="app-shells/tcsh" DEPEND="${RDEPEND}" RESTRICT="fetch" -S="${WORKDIR}/${MY_P/p3}" +S="${WORKDIR}/${MY_P/p5}" pkg_nofetch() { elog "Fill out the form at http://cns.csb.yale.edu/cns_request/" @@ -92,11 +92,13 @@ src_prepare() { sed -i \ -e "s:_CNSsolve_location_:${S}:g" \ -e "17 s:\(.*\):\1\nsetenv _POSIX2_VERSION 199209:g" \ - "${S}"/cns_solve_env + "${S}"/cns_solve_env || die sed -i \ -e "s:_CNSsolve_location_:${S}:g" \ -e "17 s:\(.*\):\1\nexport _POSIX2_VERSION; _POSIX2_VERSION=199209:g" \ - "${T}"/cns_solve_env_sh + -e "s:setenv OMP_STACKSIZE 256m:export OMP_STACKSIZE= 256m:g" \ + -e "s:limit:ulimit:g" \ + "${T}"/cns_solve_env_sh || die ebegin "Fixing shebangs..." find "${S}" -type f \ diff --git a/sci-chemistry/cns/files/1.3_p3-delete.patch b/sci-chemistry/cns/files/1.3_p5-delete.patch index cbddf4289158..cbddf4289158 100644 --- a/sci-chemistry/cns/files/1.3_p3-delete.patch +++ b/sci-chemistry/cns/files/1.3_p5-delete.patch diff --git a/sci-chemistry/cns/files/1.3_p3-gentoo.patch b/sci-chemistry/cns/files/1.3_p5-gentoo.patch index 7942c55abfb9..7942c55abfb9 100644 --- a/sci-chemistry/cns/files/1.3_p3-gentoo.patch +++ b/sci-chemistry/cns/files/1.3_p5-gentoo.patch diff --git a/sci-chemistry/cns/files/cns_solve_env_sh-1.3_p3 b/sci-chemistry/cns/files/cns_solve_env_sh-1.3_p5 index 12368f87b596..12368f87b596 100644 --- a/sci-chemistry/cns/files/cns_solve_env_sh-1.3_p3 +++ b/sci-chemistry/cns/files/cns_solve_env_sh-1.3_p5 |