diff options
Diffstat (limited to 'sci-chemistry')
| -rw-r--r-- | sci-chemistry/refmac/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-chemistry/refmac/Manifest | 14 | ||||
| -rw-r--r-- | sci-chemistry/refmac/refmac-5.6.0119.ebuild | 86 |
3 files changed, 10 insertions, 95 deletions
diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog index 6b6311c81e4c..a533f61d6b84 100644 --- a/sci-chemistry/refmac/ChangeLog +++ b/sci-chemistry/refmac/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-chemistry/refmac # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.57 2013/02/27 14:40:04 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.58 2013/06/02 14:03:03 jlec Exp $ + + 02 Jun 2013; Justin Lecher <jlec@gentoo.org> -refmac-5.6.0119.ebuild: + Drop obsolete versions 27 Feb 2013; Justin Lecher <jlec@gentoo.org> refmac-5.5.0110-r3.ebuild, refmac-5.6.0119.ebuild: diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest index 7b829422b331..baa48e1cea49 100644 --- a/sci-chemistry/refmac/Manifest +++ b/sci-chemistry/refmac/Manifest @@ -1,22 +1,20 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA256 +Hash: SHA512 AUX 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/var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0119.ebuild,v 1.4 2013/02/27 14:40:04 jlec Exp $ - -EAPI=4 - -inherit base fortran-2 flag-o-matic toolchain-funcs versionator - -MY_PV="$(get_version_component_range 1-2)_source_v${PV}" - -DESCRIPTION="Macromolecular crystallographic refinement program" -HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac" -SRC_URI=" - ${HOMEPAGE}/data/refmac_experimental/${PN}${MY_PV}.tar.gz - test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" - -SLOT="0" -LICENSE="ccp4" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" -IUSE="test" - -RDEPEND=" - !sci-chemistry/makecif - >=sci-libs/ccp4-libs-6.1.3-r7 - sci-libs/mmdb - >sci-libs/monomer-db-1 - virtual/blas - virtual/lapack" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -FORTRAN_STANDARD="77 90" - -S="${WORKDIR}" - -PATCHES=( - "${FILESDIR}"/5.6.0116-allow-dynamic-linking.patch - ) - -src_prepare() { - base_src_prepare - use test && epatch "${FILESDIR}"/5.5-test.log.patch - [[ ${FC} == *gfortran* ]] && \ - append-fflags -fno-second-underscore && \ - append-cflags -DGFORTRAN -DPROTOTYPE && \ - append-libs -lgfortran -lgfortranbegin -lstdc++ - [[ ${FC} == *ifort* ]] && \ - append-libs -lstdc++ -} - -src_compile() { - emake \ - FC=$(tc-getFC) \ - CC=$(tc-getCC) \ - CXX=$(tc-getCXX) \ - COPTIM="${CFLAGS}" \ - FOPTIM="${FFLAGS:- -O2}" \ - VERSION="" \ - XFFLAGS="-fwhole-file" \ - XCFLAGS="" \ - LLIBCCP="-lccp4f -lccp4c -lccif $($(tc-getPKG_CONFIG) --libs mmdb)" \ - LLIBLAPACK="$($(tc-getPKG_CONFIG) --libs lapack blas)" \ - LLIBOTHERS="${LIBS}" -} - -src_test() { - einfo "Starting tests ..." - source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh" - export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" - export CCP4_TEST="${WORKDIR}"/test-framework - export CCP4_SCR="${T}" - ln -sf refmac "${S}"/refmac5 - sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb - ccp4-run-thorough-tests -v test_refmac5 || die -} - -src_install() { - for i in refmac libcheck FreeTwin header2matr; do - exeinto /usr/libexec/ccp4/bin/ - doexe ${i} - dosym ../libexec/ccp4/bin/${i} /usr/bin/${i} - done - dosym refmac /usr/bin/refmac5 - dosym refmac /usr/libexec/ccp4/bin/refmac5 - dodoc *.pdf -} |