1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
|
# ChangeLog for sci-biology/bioperl
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.53 2014/07/10 22:15:26 dilfridge Exp $
10 Jul 2014; Andreas K. Huettel <dilfridge@gentoo.org> bioperl-1.6.9.ebuild:
Depend on virtual/perl-x instead of perl-core/x
28 Oct 2012; Justin Lecher <jlec@gentoo.org> -bioperl-1.5.1-r1.ebuild,
-bioperl-1.6.1.ebuild:
Drop versions with unsolvable dep sets
12 Apr 2012; Torsten Veller <tove@gentoo.org> metadata.xml:
Fix cpan distribution in metadata.xml
24 Mar 2012; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
Drop alpha/ia64/sparc keywords
20 Sep 2011; Michał Górny <mgorny@gentoo.org> bioperl-9999-r1.ebuild:
Migrate to git-2.
*bioperl-1.6.9 (18 Jul 2011)
18 Jul 2011; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.4.ebuild,
+bioperl-1.6.9.ebuild:
Version bump, drop old
*bioperl-9999-r1 (17 Oct 2010)
17 Oct 2010; Andrey Kislyuk <weaver@gentoo.org> -bioperl-9999.ebuild,
+bioperl-9999-r1.ebuild:
Update live ebuild for upstream svm->github migration, bug 338362. Thanks
to Joel Berendzen
02 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.1.ebuild:
Fix typo
01 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.1.ebuild:
Fix typo
*bioperl-1.6.1 (01 Oct 2009)
01 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-1.6.1.ebuild:
Version bump
11 Jun 2009; Markus Meier <maekke@gentoo.org> bioperl-1.6.0-r2.ebuild:
amd64 stable, bug #270585
02 Jun 2009; Christian Faulhammer <fauli@gentoo.org>
bioperl-1.6.0-r2.ebuild:
stable x86, bug 270585
24 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.0-r2.ebuild,
bioperl-9999.ebuild:
Moved Bio-ASN1-EntrezGene to PDEPEND per bug 269583
13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-9999.ebuild:
Override depend on perl 5.10
13 May 2009; Andrey Kislyuk <weaver@gentoo.org> bioperl-1.6.0-r2.ebuild,
bioperl-9999.ebuild:
Remove module-build from RDEPEND (bug 246942)
*bioperl-1.6.0-r2 (08 Apr 2009)
08 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.6.0-r1.ebuild,
+bioperl-1.6.0-r2.ebuild, bioperl-9999.ebuild:
Revision bump - add missing dependencies
24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Giving up maintainership of this package.
*bioperl-9999 (16 Mar 2009)
*bioperl-1.6.0-r1 (16 Mar 2009)
16 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> -bioperl-1.6.0.ebuild,
+bioperl-1.6.0-r1.ebuild, +bioperl-9999.ebuild:
Rewrite, commit split 1.6.0 packages and live ebuilds for packages in 1.6.0
release. Bug 179110.
*bioperl-1.6.0 (12 Mar 2009)
12 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +bioperl-1.6.0.ebuild:
Testing release for revision bump
15 Jul 2008; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
x86 stable wrt #222727
06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Stable on amd64.
06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Fixed test suite.
06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Fixed dependency on io_lib.
02 Jan 2008; Raúl Porcel <armin76@gentoo.org> bioperl-1.5.1-r1.ebuild:
Re-add ~alpha/~ia64
10 Dec 2006; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Fixed Perl dependencies (see bug #157672).
22 Oct 2006; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild,
-bioperl-1.5.1.ebuild, bioperl-1.5.1-r1.ebuild:
Fixed description. Removed old ebuild.
30 Sep 2006; Jason Wever <weeve@gentoo.org> bioperl-1.5.1.ebuild,
bioperl-1.5.1-r1.ebuild:
Added ~sparc keyword wrt bug #149577.
30 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
bioperl-1.5.1-r1.ebuild:
Fixing dependency on io_lib (thanks to Weeve for pointing this out).
*bioperl-1.5.1-r1 (30 Sep 2006)
30 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
+bioperl-1.5.1-r1.ebuild:
Added dependency on io_lib for the Staden extensions. Dropping ~alpha, ~ia64
and ~sparc keywords (see bug #149577).
*bioperl-1.5.1 (13 Sep 2006)
13 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +bioperl-1.5.1.ebuild:
New upstream version. Thanks to Greg Wilson <gdw1@cornell.edu>, Martin
Mokrejs <mmokrejs@ribosome.natur.cuni.cz> and Neil Shephard
<nshephard@gmail.com> for their work (see bug #79459).
18 Aug 2006; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
Marking amd64 stable
30 Mar 2006; Aron Griffis <agriffis@gentoo.org> bioperl-1.4.ebuild:
Mark 1.4 ~ia64
13 Feb 2006; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
Virtuals for perl-core
28 Nov 2005; <mcumming@gentoo.org> bioperl-1.0.2.ebuild,
bioperl-1.2.2.ebuild, bioperl-1.2.3.ebuild, bioperl-1.2.ebuild,
bioperl-1.4.ebuild:
Switched from perl-module to perl-app eclass
19 Sep 2005; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Maintainer changed from Stephen Diener (MIA) to Olivier Fisette.
05 Aug 2005; Herbie Hopkins <herbs@gentoo.org> bioperl-1.4.ebuild:
Marked ~amd64 wrt bug #101339.
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.3.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.2.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.0.2.ebuild:
dev-perl/Storable => perl-core/Storable migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.4.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.3.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.2.2.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
25 May 2005; Michael Cummings <mcummings@gentoo.org> bioperl-1.0.2.ebuild:
dev-perl/File-Temp => perl-core/File-Temp migration
30 Mar 2005; Gustavo Zacarias <gustavoz@gentoo.org> bioperl-1.4.ebuild:
Keyworded ~sparc
09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild:
Added regression test support. Fixes bug #38169.
29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
Change encoding to UTF-8 for GLEP 31 compliance
*bioperl-1.2 (23 Dec 2004)
23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+files/biodbgff-enable-1.2.2.patch, +files/biodbgff-enable-1.2.3.patch,
+files/bioperl-1.2-manpage.diff, +files/domanpages-1.2.2.patch,
+bioperl-1.0.2.ebuild, +bioperl-1.2.2.ebuild, +bioperl-1.2.3.ebuild,
+bioperl-1.2.ebuild, +bioperl-1.4.ebuild:
Moved from app-sci/bioperl to sci-biology/bioperl.
30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> bioperl-1.4.ebuild,
bioperl-1.0.2.ebuild:
Q.A.: Fixed RDEPEND=$DEPEND, fixed LICENSE.
03 Aug 2004; David Holm <dholm@gentoo.org> bioperl-1.4.ebuild:
Added to ~ppc.
03 Jul 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.4.ebuild:
Stable on alpha.
02 Jun 2004; Aron Griffis <agriffis@gentoo.org> bioperl-1.2.2.ebuild,
bioperl-1.2.3.ebuild:
Fix use invocation
05 May 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
bumped 1.4 to stable
05 May 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.2.ebuild:
Stable on alpha.
20 Apr 2004; Bryan Østergaard <kloeri@gentoo.org> bioperl-1.4.ebuild:
Added ~alpha to keywords.
14 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
removed src_test; fixes bug #38169, or at least works around it
*bioperl-1.4 (08 Jan 2004)
08 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-1.4.ebuild:
version bump
24 Nov 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.3.ebuild:
bump to stable.
*bioperl-1.2.3 (24 Oct 2003)
24 Oct 2003; <sediener@gentoo.org> bioperl-1.2.3.ebuild:
new release added.
*bioperl-1.2.2 (28 Aug 2003)
28 Aug 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.2.ebuild:
Bumped to stable x86
*bioperl-1.2.2 (02 Aug 2003)
02 Aug 2003; Stephen Diener <sediener@gentoo.org> bioperl-1.2.2.ebuild,
files/biodbgff-enable-1.2.2.patch, files/domanpages-1.2.2.patch:
New Version thanks to Gontran Zepeda <gontran@gontran.net> in bug# 24467 :
Also fixes bug# 25079
*bioperl-1.2 (24 Apr 2003)
24 Apr 2003; Jon Portnoy <avenj@gentoo.org> bioperl-1.2.ebuild :
Version bump, ebuild submitted by Gontran Zepeda <gontran@gontran.net>
in bug #13826
*bioperl-1.0.2 (21 Dec 2002)
21 Dec 2002; Michael Cummings <mcummings@gentoo.org>
bioperl-1.0.2.ebuild:
Initial import. Ebuild submitted by Gontran Zepeda <gontran@gontran.net>
Bug 11498
|
GitWeb