blob: bcd9ca25cedcbc260ac78e14e85d28193004782d (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
|
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasta/fasta-35.4.10.ebuild,v 1.8 2011/11/21 15:30:09 jlec Exp $
EAPI="2"
inherit eutils flag-o-matic toolchain-funcs
DESCRIPTION="FASTA is a DNA and Protein sequence alignment software package"
HOMEPAGE="http://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml"
SRC_URI="http://faculty.virginia.edu/wrpearson/${PN}/${PN}3/${P}.tar.gz"
LICENSE="fasta"
SLOT="0"
KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
IUSE="debug icc sse2 test"
DEPEND="
icc? ( dev-lang/icc )
test? ( app-shells/tcsh )"
RDEPEND=""
pkg_setup() {
if use icc; then
elog "Please make your CFLAGS are supported by icc"
elog "Either make sure they are set in /etc/make.conf"
elog "or run"
elog "env CFLAGS="..." emerge fasta"
epause 5
fi
}
src_prepare() {
CC_ALT=
CFLAGS_ALT=
ALT=
use debug && append-flags -DDEBUG
if use icc ; then
CC_ALT=icc
ALT="${ALT}_icc"
else
CC_ALT=$(tc-getCC)
use x86 && ALT="32"
use amd64 && ALT="64"
fi
if use sse2 ; then
ALT="${ALT}_sse2"
append-flags -msse2
use icc || append-flags -ffast-math
fi
export CC_ALT="${CC_ALT}"
export ALT="${ALT}"
epatch "${FILESDIR}"/${PV}-ldflags.patch
}
src_compile() {
cd src
emake -f ../make/Makefile.linux${ALT} CC="${CC_ALT} ${CFLAGS}" HFLAGS="${LDFLAGS} -o" all || die
}
src_install() {
dobin bin/* || die
doman doc/{prss3.1,fasta35.1,pvcomp.1,fasts3.1,fastf3.1,ps_lav.1,map_db.1} || die
dodoc FASTA_LIST README doc/{README.versions,readme*,fasta*,changes*} || die
}
|
GitWeb
