1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
|
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/arp-warp-bin/arp-warp-bin-7.1-r2.ebuild,v 1.2 2013/06/04 12:49:48 jlec Exp $
EAPI=5
PYTHON_COMPAT=( python{2_6,2_7} )
inherit eutils prefix python-single-r1
MY_P="arp_warp_${PV}"
DESCRIPTION="Software for improvement and interpretation of crystallographic electron density maps"
SRC_URI="${MY_P}.tar.gz"
HOMEPAGE="http://www.embl-hamburg.de/ARP/"
LICENSE="ArpWarp"
SLOT="0"
KEYWORDS="-* ~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
RDEPEND="${PYTHON_DEPS}
app-shells/tcsh
sci-chemistry/refmac
virtual/awk
virtual/jre
virtual/opengl
x11-libs/libX11"
DEPEND=""
RESTRICT="fetch"
S="${WORKDIR}/${MY_P}"
QA_PREBUILT="opt/arp-warp-bin/bin/*"
pkg_nofetch(){
elog "Fill out the form at http://www.embl-hamburg.de/ARP/"
elog "and place ${A} in ${DISTDIR}"
}
src_prepare() {
epatch "${FILESDIR}"/${PV}-setup.patch
eprefixify "${S}"/share/arpwarp_setup_base.*
sed "s:EPYTHON:${EPYTHON}:g" -i "${S}"/share/arpwarp_setup_base.* || die
python_fix_shebang flex-wARP-src-354/*py
sed -e "s:/usr/:${EPREFIX}/usr/:g" -i flex-wARP-src-354/*py || die
sed -e '/exit/d' -i "${S}"/share/arpwarp_setup_base.* || die
}
src_install(){
m_type=$(uname -m)
os_type=$(uname)
insinto /opt/${PN}/byte-code/${EPYTHON}
doins "${S}"/flex-wARP-src-354/*py
exeinto /opt/${PN}/bin/bin-${m_type}-${os_type}
doexe "${S}"/bin/bin-${m_type}-${os_type}/* "${S}"/share/*sh
insinto /opt/${PN}/bin/bin-${m_type}-${os_type}
doins "${S}"/share/*{gif,bmp,XYZ,bash,csh,dat,lib,tbl,llh}
insinto /etc/profile.d/
newins "${S}"/share/arpwarp_setup_base.csh 90arpwarp_setup.csh
newins "${S}"/share/arpwarp_setup_base.bash 90arpwarp_setup.sh
dodoc "${S}"/README manual/UserGuide${PV}.pdf
dohtml -r "${S}"/manual/html/*
python_optimize "${ED}"/opt/${PN}/byte-code/${EPYTHON}
}
pkg_postinst(){
testcommand=$(echo 3 2 | awk '{printf"%3.1f",$1/$2}')
if [ $testcommand == "1,5" ];then
ewarn "*** ERROR ***"
ewarn " 3/2=" $testcommand
ewarn "Invalid decimal separator (must be ".")"
ewarn "You need to set this correctly!!!"
echo
ewarn "One way of setting the decimal separator is:"
ewarn "setenv LC_NUMERIC C' in your .cshrc file"
ewarn "\tor"
ewarn "export LC_NUMERIC=C' in your .bashrc file"
ewarn "Otherwise please consult your system manager"
fi
grep -q sse2 /proc/cpuinfo || einfo "The CPU is lacking SSE2! You should use the cluster at EMBL-Hamburg."
echo
}
|
GitWeb