dev-perl/Bio-DB-HTS: remove old

Package-Manager: Portage-2.3.24, Repoman-2.3.6

2 files changed, 0 insertions, 77 deletions

diff --git a/dev-perl/Bio-DB-HTS/files/2.10-build_search_for_so.patch b/dev-perl/Bio-DB-HTS/files/2.10-build_search_for_so.patch
deleted file mode 100644
index b3d11bbbe7aa..000000000000
--- a/dev-perl/Bio-DB-HTS/files/2.10-build_search_for_so.patch
+++ /dev/null
@@ -1,29 +0,0 @@
---- a/Build.PL
-+++ b/Build.PL
-@@ -125,7 +125,7 @@
- 
-     my $hts_lib     = "$root";
-     my $hts_include = "$root/htslib";
--    if (-f "$hts_lib/libhts.a" && -f "$hts_include/hts.h") {
-+    if ((-f "$hts_lib/libhts.so" || -f "$hts_lib/libhts.a") && -f "$hts_include/hts.h") {
-         $self->config_data('hts_lib'     => $hts_lib);
-         $self->config_data('hts_include' => $hts_include);
-         return 1;
-@@ -145,7 +145,7 @@
- 
-     my $hts_lib     = "$root/lib";
-     my $hts_include = "$root/include/htslib";
--    if (-f "$hts_lib/libhts.a" && -f "$hts_include/hts.h") {
-+    if ((-f "$hts_lib/libhts.so" || -f "$hts_lib/libhts.a") && -f "$hts_include/hts.h") {
-         $self->config_data('hts_lib'     => $hts_lib);
-         $self->config_data('hts_include' => $hts_include);
-         return 1;
-@@ -164,7 +164,7 @@
- This module requires htslib (http://htslib/org)
- Install it if you have not done so already.
- 
--This script will attempt to locate htslib by looking for hts.h and libhts.a in:
-+This script will attempt to locate htslib by looking for hts.h and libhts.so/libhts.a in:
- 
-   1. --htslib command line argument
-   2. HTSLIB_DIR environment variable
diff --git a/dev-perl/Bio-DB-HTS/files/2.10-build_split_htslib_opts.patch b/dev-perl/Bio-DB-HTS/files/2.10-build_split_htslib_opts.patch
deleted file mode 100644
index d68bc54e40d9..000000000000
--- a/dev-perl/Bio-DB-HTS/files/2.10-build_split_htslib_opts.patch
+++ /dev/null
@@ -1,48 +0,0 @@
---- a/Build.PL
-+++ b/Build.PL
-@@ -68,7 +68,13 @@
-     # If either of these are set, we expect to find the htslib files there:
-     # (They're explicitly set by the user, so we shouldn't fall back to
-     # finding another copy somewhere else.)
--    if (my $dir = $self->args('htslib')) {
-+    if (my ($incdir, $libdir) = ($self->args('htslib-includedir'), $self->args('htslib-libdir'))) {
-+        return 1 if $self->find_hts_in_split_install_dirs($incdir, $libdir);
-+        $self->die_hts_not_found(
-+            "--htslib-includedir '$incdir' or --htslib-libdir '$libdir' command line parameters do not contain expected files\n"
-+        );
-+    }
-+    elsif (my $dir = $self->args('htslib')) {
-         return 1 if $self->find_hts_in_build_dir($dir);
-         return 1 if $self->find_hts_in_install_dir($dir);
-         $self->die_hts_not_found(
-@@ -155,6 +161,22 @@
-     }
- }
- 
-+sub find_hts_in_split_install_dirs {
-+    my ($self, $hts_include, $hts_lib) = @_;
-+
-+    chomp($hts_include);
-+    chomp($hts_lib);
-+
-+    if ((-f "$hts_lib/libhts.so" || -f "$hts_lib/libhts.a") && -f "$hts_include/hts.h") {
-+        $self->config_data('hts_lib'     => $hts_lib);
-+        $self->config_data('hts_include' => $hts_include);
-+        return 1;
-+    }
-+    else {
-+        return 0;
-+    }
-+}
-+
- sub die_hts_not_found {
-     my ($self, $msg) = @_;
- 
-@@ -166,6 +188,7 @@
- 
- This script will attempt to locate htslib by looking for hts.h and libhts.so/libhts.a in:
- 
-+  0. --htslib-includedir and --htslib-libdir command line arguments
-   1. --htslib command line argument
-   2. HTSLIB_DIR environment variable
-   3. --prefix command line argument (which also sets installation location)