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| author |   Marek Szuba <marecki@gentoo.org> | 2018-04-26 12:25:15 +0100 |
|---|---|---|
| committer | Marek Szuba <marecki@gentoo.org> | 2018-04-26 12:30:28 +0100 |
| commit | 9a9cafec65f1eb3de700a077dae30537993823cc (patch) | |
| tree | 3e4212fd6c27372203cb3b09eccdacd052db9863 /dev-perl/Bio-DB-HTS/files | |
| parent | sys-apps/restorecond: bump to 2.8_rc1 (diff) | |
| download | gentoo-9a9cafec65f1eb3de700a077dae30537993823cc.tar.gz gentoo-9a9cafec65f1eb3de700a077dae30537993823cc.tar.bz2 gentoo-9a9cafec65f1eb3de700a077dae30537993823cc.zip | |
dev-perl/Bio-DB-HTS: new package
Perl bindings for sci-libs/htslib, used by e.g. Ensembl.
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Diffstat (limited to 'dev-perl/Bio-DB-HTS/files')
| -rw-r--r-- | dev-perl/Bio-DB-HTS/files/2.10-build_search_for_so.patch | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/dev-perl/Bio-DB-HTS/files/2.10-build_search_for_so.patch b/dev-perl/Bio-DB-HTS/files/2.10-build_search_for_so.patch new file mode 100644 index 000000000000..b3d11bbbe7aa --- /dev/null +++ b/dev-perl/Bio-DB-HTS/files/2.10-build_search_for_so.patch @@ -0,0 +1,29 @@ +--- a/Build.PL ++++ b/Build.PL +@@ -125,7 +125,7 @@ + + my $hts_lib = "$root"; + my $hts_include = "$root/htslib"; +- if (-f "$hts_lib/libhts.a" && -f "$hts_include/hts.h") { ++ if ((-f "$hts_lib/libhts.so" || -f "$hts_lib/libhts.a") && -f "$hts_include/hts.h") { + $self->config_data('hts_lib' => $hts_lib); + $self->config_data('hts_include' => $hts_include); + return 1; +@@ -145,7 +145,7 @@ + + my $hts_lib = "$root/lib"; + my $hts_include = "$root/include/htslib"; +- if (-f "$hts_lib/libhts.a" && -f "$hts_include/hts.h") { ++ if ((-f "$hts_lib/libhts.so" || -f "$hts_lib/libhts.a") && -f "$hts_include/hts.h") { + $self->config_data('hts_lib' => $hts_lib); + $self->config_data('hts_include' => $hts_include); + return 1; +@@ -164,7 +164,7 @@ + This module requires htslib (http://htslib/org) + Install it if you have not done so already. + +-This script will attempt to locate htslib by looking for hts.h and libhts.a in: ++This script will attempt to locate htslib by looking for hts.h and libhts.so/libhts.a in: + + 1. --htslib command line argument + 2. HTSLIB_DIR environment variable |