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author | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 13:49:04 -0700 |
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committer | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 17:38:18 -0700 |
commit | 56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch) | |
tree | 3f91093cdb475e565ae857f1c5a7fd339e2d781e /licenses/psipred | |
download | gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.gz gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.bz2 gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.zip |
proj/gentoo: Initial commit
This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.
This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.
Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'licenses/psipred')
-rw-r--r-- | licenses/psipred | 89 |
1 files changed, 89 insertions, 0 deletions
diff --git a/licenses/psipred b/licenses/psipred new file mode 100644 index 000000000000..7f797d17d417 --- /dev/null +++ b/licenses/psipred @@ -0,0 +1,89 @@ +PLEASE READ THE FOLLOWING LICENSE AGREEMENT. BY USING THE PROGRAM YOU ARE +ACKNOWLEDGING THE FACT THAT YOU AGREE TO THE TERMS OUTLINED IN THIS +AGREEMENT. USERS WISHING TO USE THE SOFTWARE FOR COMMERCIAL ACTIVITIES +NOT COVERED BY THIS AGREEMENT SHOULD SEND E-MAIL TO: dtj@cs.ucl.ac.uk + +* NOTE RECENT CHANGES TO PARAGRAPH 8 * + + + + PSIPRED2 - PROTEIN SECONDARY STRUCTURE PREDICTION PROGRAM BY D.T.JONES + ---------------------------------------------------------------------- + + GENERAL LICENSE & + ----------------- + + CONFIDENTIALITY AGREEMENT + ------------------------- + + + +In regard to the protein structure prediction program (PSIPRED2) +herewith (the Software) the copyright and other intellectual property +rights to which belong to the Author(s). + +Any user (the User) of the program undertakes to the Copyright holder that he +or she shall be bound by the following terms and conditions:- + +1. The User will receive the Software and any related documentation in +confidence and will not use the same except for the purpose of their own +research. The Software will be used only by such of the User's officers or +employees to whom it must reasonably be communicated to enable them to +undertake their research and who agree to be bound by the same confidence. +The User shall procure and enforce such agreement from his or her staff for +the benefit of the Copyright holder. + +2. The publication of research using the Software must include an +appropriate citation to the method: + +Jones, D.T. (1999) Protein secondary structure prediction based on +position-specific scoring matrices. J. Mol. Biol. 292:195-202. + +3. All forms of the Software will be kept in a reasonably secure place to +prevent unauthorised access. + +4. Each copy of the Software or, if not practicable then, any package +associated therewith shall be suitably marked (and such marking maintained) +with the following copyright notice: "Copyright 2000 D.T.Jones. All Rights +Reserved.". + +5. The Software may be modified, but any changes made shall be communicated +to the Author(s) and made freely available. + +6. The Software may not be sold as a standalone package, or incorporated into +a commercial software package without the written permission of the Copyright +holder. The Software may be used freely for individual academic or commercial +research. The Software may also be made freely available for training or +teaching purposes. + +7. The results produced by the Software may not be incorporated into any +data banks or databases which are subject to the payment of access or +license fees without the written permission of the Copyright holder. + +8. The Software may be made available to users over a local network or +wide area network (including the Internet), but only if access is granted +free of charge to all authorised users. Incorporation of the Software into +a commercial Web site or other fee paying service is not allowed without +the written permission of the Copyright holder. If PSIPRED results are +returned to the user via such a network service, then a suitable +acknowledgement of the PSIPRED method must be returned somewhere in the +output text. + +9. The confidentiality obligation in paragraph one shall not apply: + + (i) to information and data known to the User at the time of + receipt hereunder (as evidenced by its written records); + + (ii) to information and data which was at the time of receipt in the + public domain or thereafter becomes so through no wrongful act of + the User; + + (iii) to information and data which the User receives from a third + party not in breach of any obligation of confidentiality owed to + the Author(s). + +10. The User understands that the Software is supplied "as is". No warranty + as to its fitness or suitability for any purpose whatsoever is made or + implied. In no event shall the Author(s) or Copyright holder be held + responsible for any direct or indirect damages arising through the use + of the Software. |