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| author |   NHOrus <jy6x2b32pie9@yahoo.com> | 2024-05-08 13:30:27 +0400 |
|---|---|---|
| committer |   Sam James <sam@gentoo.org> | 2024-05-09 02:09:05 +0100 |
| commit | 4919e107f95d762348df57ca9a8e75307d9222bc (patch) | |
| tree | ee712273f3c88334cb4d58e3bc463856f3fb0ae6 /sci-biology | |
| parent | sci-electronics/irsim: move patches to devspace (diff) | |
| download | gentoo-4919e107f95d762348df57ca9a8e75307d9222bc.tar.gz gentoo-4919e107f95d762348df57ca9a8e75307d9222bc.tar.bz2 gentoo-4919e107f95d762348df57ca9a8e75307d9222bc.zip | |
sci-biology/hmmer: Add missing include into configure
There are no autotools source files, so we can't just autoreconf the problem out of existence
[sam: Revbump.]
Closes: https://bugs.gentoo.org/900551
Signed-off-by: NHOrus <jy6x2b32pie9@yahoo.com>
Closes: https://github.com/gentoo/gentoo/pull/36599
Signed-off-by: Sam James <sam@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/hmmer/files/hmmer-2.3.2-fix-missing-include-in-configure.patch | 18 | ||||
| -rw-r--r-- | sci-biology/hmmer/hmmer-2.3.2-r6.ebuild (renamed from sci-biology/hmmer/hmmer-2.3.2-r5.ebuild) | 3 |
2 files changed, 20 insertions, 1 deletions
diff --git a/sci-biology/hmmer/files/hmmer-2.3.2-fix-missing-include-in-configure.patch b/sci-biology/hmmer/files/hmmer-2.3.2-fix-missing-include-in-configure.patch new file mode 100644 index 000000000000..37683d425edb --- /dev/null +++ b/sci-biology/hmmer/files/hmmer-2.3.2-fix-missing-include-in-configure.patch @@ -0,0 +1,18 @@ +--- a/squid/configure 2024-05-08 09:21:15.751063495 -0000 ++++ b/squid/configure 2024-05-08 09:22:50.491502934 -0000 +@@ -2493,6 +2493,7 @@ + cat confdefs.h >>conftest.$ac_ext + cat >>conftest.$ac_ext <<_ACEOF + /* end confdefs.h. */ ++#include <stdlib.h> + int + main () + { +@@ -3500,6 +3501,7 @@ + cat >>conftest.$ac_ext <<_ACEOF + /* end confdefs.h. */ + #include <ctype.h> ++#include <stdlib.h> + #if ((' ' & 0x0FF) == 0x020) + # define ISLOWER(c) ('a' <= (c) && (c) <= 'z') + # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) diff --git a/sci-biology/hmmer/hmmer-2.3.2-r5.ebuild b/sci-biology/hmmer/hmmer-2.3.2-r6.ebuild index b305820faff3..74a8a151b0c4 100644 --- a/sci-biology/hmmer/hmmer-2.3.2-r5.ebuild +++ b/sci-biology/hmmer/hmmer-2.3.2-r6.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2024 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 @@ -20,6 +20,7 @@ BDEPEND="test? ( dev-lang/perl )" PATCHES=( "${FILESDIR}/${P}-fix-perl-shebangs.patch" "${FILESDIR}/${P}-fix-build-system-destdir.patch" + "${FILESDIR}/${P}-fix-missing-include-in-configure.patch" ) src_configure() { |