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| author |   Ted Tanberry <ted.tanberry@gmail.com> | 2015-12-25 00:32:17 +0100 |
|---|---|---|
| committer |   Justin Lecher <jlec@gentoo.org> | 2015-12-25 12:44:51 +0100 |
| commit | 319e280a8e026786b319d48de907e440049f490c (patch) | |
| tree | dc4bd9d17371d75576fed0a64daa76f6441305d1 /sci-libs/libmems/files | |
| parent | sci-biology/mcl: Version bump, fix bug 569040 and QA issues. (diff) | |
| download | gentoo-319e280a8e026786b319d48de907e440049f490c.tar.gz gentoo-319e280a8e026786b319d48de907e440049f490c.tar.bz2 gentoo-319e280a8e026786b319d48de907e440049f490c.zip | |
sci-libs/libmems: Version bump, fix bug 529770 and QA issues.
Package-Manager: portage-2.2.26
Diffstat (limited to 'sci-libs/libmems/files')
| -rw-r--r-- | sci-libs/libmems/files/libmems-1.6_p1-broken-constness.patch | 24 | ||||
| -rw-r--r-- | sci-libs/libmems/files/libmems-1.6_p1-build.patch | 10 |
2 files changed, 34 insertions, 0 deletions
diff --git a/sci-libs/libmems/files/libmems-1.6_p1-broken-constness.patch b/sci-libs/libmems/files/libmems-1.6_p1-broken-constness.patch new file mode 100644 index 000000000000..0bd922c9e111 --- /dev/null +++ b/sci-libs/libmems/files/libmems-1.6_p1-broken-constness.patch @@ -0,0 +1,24 @@ +Fix bug 529770 caused by non-const copy constructor. + +--- libmems-1.6_p1/libMems/Aligner.cpp ++++ libmems-1.6_p1/libMems/Aligner.cpp +@@ -939,7 +939,7 @@ + MatchLeftEndComparator( unsigned seq = 0 ){
+ m_seq = seq;
+ }
+- MatchLeftEndComparator( MatchLeftEndComparator& msc ){
++ MatchLeftEndComparator( const MatchLeftEndComparator& msc ){
+ m_seq = msc.m_seq;
+ }
+ // TODO?? make this do a wraparound comparison if all is equal?
+--- libmems-1.6_p1/libMems/Aligner.h ++++ libmems-1.6_p1/libMems/Aligner.h +@@ -49,7 +49,7 @@ + LabeledMemComparator( uint seq ){
+ m_seq = seq;
+ }
+- LabeledMemComparator( LabeledMemComparator& lmc ){
++ LabeledMemComparator( const LabeledMemComparator& lmc ){
+ m_seq = lmc.m_seq;
+ }
+ boolean operator()(const LabeledMem& a, const LabeledMem& b) const{
diff --git a/sci-libs/libmems/files/libmems-1.6_p1-build.patch b/sci-libs/libmems/files/libmems-1.6_p1-build.patch index 63e5f1216756..04d5dd9c82ac 100644 --- a/sci-libs/libmems/files/libmems-1.6_p1-build.patch +++ b/sci-libs/libmems/files/libmems-1.6_p1-build.patch @@ -17,3 +17,13 @@ index 6101f71..d66053d 100644 LIBMEMS_H = \ RepeatHash.h MatchHashEntry.h \ +--- a/libMems/dmSML/util.c ++++ b/libMems/dmSML/util.c +@@ -2,6 +2,7 @@ + #include "config.h" + #endif + ++#include <stdlib.h> + #include <stdio.h> + #include "libMems/dmSML/util.h" + |