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path: root/sci-biology/seqan
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* sci-biology/seqan: drop 2.4.0-r1Andreas Sturmlechner2022-12-196-161/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-biology/seqan: Keyword 3.1.0 x86, #834863Jakov Smolić2022-06-011-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-biology/seqan: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-161-1/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/seqan: add version 3.1.0Andrew Ammerlaan2022-02-242-0/+32
| | | | | | Closes: https://bugs.gentoo.org/774702 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* **/metadata.xml: Replace http by https in DOCTYPE elementUlrich Müller2021-09-111-1/+1
| | | | | Bug: https://bugs.gentoo.org/552720 Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-biology/seqan: Drop 2.4.0 (r0)Andreas Sturmlechner2021-03-071-76/+0
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-biology/seqan: Drop unmaintained live ebuildAndreas Sturmlechner2021-03-071-81/+0
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-biology/seqan: Port to EAPI-7, cmake.eclass, httpsAndreas Sturmlechner2021-03-074-17/+151
| | | | | | | | | | - Fix cmake config install path - Fix pkgconfig install path - Fix examples install path - Fix build with BUILD_SHARED_LIBS=ON default Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-biology/seqan: remove unused fileMichael Mair-Keimberger2020-09-181-10/+0
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/17590 Package-Manager: Portage-3.0.6, Repoman-3.0.1 Signed-off-by: Michael Mair-Keimberger <m.mairkeimberger@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/seqan: Eradicate doc (python2)Michał Górny2020-09-092-34/+16
| | | | | Closes: https://bugs.gentoo.org/735442 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/seqan: Remove old (drop to ~arch)Michał Górny2020-09-096-243/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* */*: [QA] Fix trivial cases of MissingTestRestrictMichał Górny2019-12-112-2/+4
| | | | | | | | | | | | | | | | | | The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/seqan: inherit versionatorAndreas Sturmlechner2018-05-191-2/+2
| | | | Package-Manager: Portage-2.3.38, Repoman-2.3.9
* sci-biology/seqan: inherit versionatorAndreas Sturmlechner2018-05-181-2/+2
| | | | Package-Manager: Portage-2.3.38, Repoman-2.3.9
* sci-biology/seqan: Add live ebuildDavid Seifert2018-02-111-0/+90
| | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/seqan: Version bump to 2.4.0David Seifert2018-02-114-4/+112
| | | | | | | * Add USE=tools option to install command-line tools Closes: https://bugs.gentoo.org/618278 Package-Manager: Portage-2.3.24, Repoman-2.3.6
* sci-biology/*: Update Manifest hashesMichał Górny2017-12-101-2/+2
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* sci-biology/seqan: [QA] Add missing python metadata variablesDavid Seifert2017-04-202-16/+36
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* Drop $Id$ per council decision in bug #611234.Robin H. Johnson2017-02-282-2/+0
| | | | Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
* sci-biology/seqan: x86 stable wrt bug #525628Agostino Sarubbo2016-12-291-1/+1
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/seqan: amd64 stable wrt bug #525628Aaron Bauman2016-12-261-1/+1
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* sci-biology/seqan: Add blocker for older SLOTsDavid Seifert2016-12-141-17/+23
| | | | | | Gentoo-bug: 602508 Package-Manager: portage-2.3.3
* sci-biology/seqan: version bumpDavid Seifert2016-07-302-2/+4
| | | | Package-Manager: portage-2.3.0
* sci-biology/seqan: Remove old and broken ebuildsDavid Seifert2016-04-095-178/+0
| | | | Package-Manager: portage-2.2.28
* sci-biology/seqan: SLOT 1.4 and 2.1, allow for parallel installationDavid Seifert2016-04-095-0/+186
| | | | | | | Gentoo-Bug: 566502 * EAPI=6 Package-Manager: portage-2.2.28
* Set appropriate maintainer types in metadata.xml (GLEP 67)Michał Górny2016-01-241-1/+1
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* Replace all herds with appropriate projects (GLEP 67)Michał Górny2016-01-241-1/+4
| | | | | Replace all uses of herd with appropriate project maintainers, or no maintainers in case of herds requested to be disbanded.
* sci-biology/seqan: drop SSE instruction check in pkg_pretend(), which ↵Sergey Popov2015-10-191-12/+3
| | | | | | sometimes fails on correct situations, add -msse4.1 unconditionally Package-Manager: portage-2.2.20
* sci-biology/seqan: correct dependency on sci-biology/samtoolsSergey Popov2015-10-191-1/+9
| | | | | | | | | Seqan 1.3.1 does not compile with samtools greater than 0.1.19 Also it does not compile with GCC 4.9 or higher, so restrict this too Gentoo-Bug: 514250 Package-Manager: portage-2.2.20
* Revert DOCTYPE SYSTEM https changes in metadata.xmlMike Gilbert2015-08-241-1/+1
| | | | | | | repoman does not yet accept the https version. This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450. Bug: https://bugs.gentoo.org/552720
* Use https by defaultJustin Lecher2015-08-241-1/+1
| | | | | | Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
* proj/gentoo: Initial commitRobin H. Johnson2015-08-088-0/+223
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed