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DEFINED_PHASES=configure install postinst prepare setup
DEPEND=dev-libs/boost sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 sci-biology/seqan:1.4 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
EAPI=6
HOMEPAGE=https://ccb.jhu.edu/software/tophat/
IUSE=debug python_targets_python2_7
KEYWORDS=~amd64 ~x86
LICENSE=Artistic
RDEPEND=dev-libs/boost sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
SLOT=0
SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
_eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_install:-
_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	eutils	792f83d5ec9536cb5ccef375469d8bde	flag-o-matic	8632fcd33a047954f007dee9a137bdcc	libtool	4890219c51da247200223277f993e054	multilib	d062ae4ba2fc40a19c11de2ad89b6616	python-single-r1	2ebea8fbab356d63110245129a67a6dd	python-utils-r1	c0ed2a2f233d3af6dd556048695dc5cb	toolchain-funcs	e886935aae2b45a545665444ab0667cf
_md5_=99a8a65bd99f7819e12ab99f02b47509