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--- a/src/superpose_on_core_2.cpp +++ b/src/superpose_on_core_2.cpp @@ -55,6 +55,8 @@ using std::ofstream ; #include "multiple_superposition.h" #include "3D_manip_functions.h" +#include <unistd.h> + int **core_columns ; int *core_columns_2 , NCORE = 0 ; int **algn_to_seq_hash ;