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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-03-06 23:05:28 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-03-06 23:05:28 +0000 |
| commit | caa45ddf335c3663cad7d18210dcb1985c72cdc8 (patch) | |
| tree | 2d35ed967349f7c8f7e159230791d22c5513959d /sci-biology | |
| parent | Version bump #305405 by Walther which also fixes #299962 by Dennis Schridde. (diff) | |
| download | gentoo-2-caa45ddf335c3663cad7d18210dcb1985c72cdc8.tar.gz gentoo-2-caa45ddf335c3663cad7d18210dcb1985c72cdc8.tar.bz2 gentoo-2-caa45ddf335c3663cad7d18210dcb1985c72cdc8.zip | |
Version bump (bugfix release)
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/mira/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/mira/mira-3.0.1.ebuild | 44 |
2 files changed, 50 insertions, 1 deletions
diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog index e3d10b3a5912..a97612370582 100644 --- a/sci-biology/mira/ChangeLog +++ b/sci-biology/mira/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/mira # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.4 2010/02/25 19:00:05 ssuominen Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.5 2010/03/06 23:05:28 weaver Exp $ + +*mira-3.0.1 (06 Mar 2010) + + 06 Mar 2010; Andrey Kislyuk <weaver@gentoo.org> +mira-3.0.1.ebuild: + Version bump (bugfix release) 25 Feb 2010; Samuli Suominen <ssuominen@gentoo.org> mira-3.0.0.ebuild, +files/mira-3.0.0-asneeded.patch: diff --git a/sci-biology/mira/mira-3.0.1.ebuild b/sci-biology/mira/mira-3.0.1.ebuild new file mode 100644 index 000000000000..ab4263fb42c9 --- /dev/null +++ b/sci-biology/mira/mira-3.0.1.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.1.ebuild,v 1.1 2010/03/06 23:05:28 weaver Exp $ + +EAPI="2" + +MIRA_3RDPARTY_PV="06-03-2010" + +inherit base autotools + +DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" +HOMEPAGE="http://www.chevreux.org/projects_mira.html" +SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2 + mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +IUSE="doc" +KEYWORDS="~amd64 ~x86" + +CDEPEND=">=dev-libs/boost-1.35.0" +DEPEND="${CDEPEND} + dev-libs/expat + doc? ( >=app-text/texlive-core-2009 )" +RDEPEND="${CDEPEND}" + +src_prepare() { + find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die + epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch + AT_M4DIR="config/m4" eautoreconf +} + +src_compile() { + base_src_compile + if use doc; then emake -C doc clean docs || die; fi +} + +src_install() { + einstall || die + dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL + find doc/docs/man -type f | xargs doman + find doc/docs/texinfo -type f | xargs doinfo + dobin "${WORKDIR}"/3rdparty/{sff_extract,*.pl} +} |