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authorMichael Schubert <mschu.dev@gmail.com>2024-07-16 12:13:03 +0000
committerAndrew Ammerlaan <andrewammerlaan@gentoo.org>2024-07-19 14:35:03 +0200
commit727c14502c0538299f148865d6a39c053fb56da1 (patch)
tree4b9586622256b0b1e215af9de8e515041fc33177 /sci-biology
parentsci-biology/bx-python: version bump 0.12.0, enable tests (diff)
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dev-python/pyfaidx: version bump 0.8.1.1
Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/pyfaidx/Manifest2
-rw-r--r--sci-biology/pyfaidx/metadata.xml16
-rw-r--r--sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild22
-rw-r--r--sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild24
4 files changed, 0 insertions, 64 deletions
diff --git a/sci-biology/pyfaidx/Manifest b/sci-biology/pyfaidx/Manifest
deleted file mode 100644
index 0bb3b35f4..000000000
--- a/sci-biology/pyfaidx/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST pyfaidx-0.5.9.2.tar.gz 93438 BLAKE2B 3d3d225907f8bd04fdf4b20d608d02cd0e5a723f2a73df24b732992f139102e2a9042c37c5a73f762256fd007dd7e14bace910c0961e60870926c2ce1dca3ac3 SHA512 57b94421d6858fa2bd7b867b386d47d53d3afd75878b08e6e32fb7d8f4942f2a051e0123e6c4b4395abe656d639fa4f47afadbd8c4b2cbc001c5113cbbf96af4
-DIST pyfaidx-0.7.2.1.tar.gz 102951 BLAKE2B d8c76bb9f817a7f4a0f3aa58ef20344c1d5aa5e99a181f1171145264baab4603d772d7c37f8286654442ee0f6bf3b62f8d94d6e0495a65f54495e084403c0b92 SHA512 20833c2e11f942aa69b524170a0203ca4d035d058d1d8029c2fab50c4b60a4e947cbbdc0dc954e4ecdefbf07d095f861a86dbebdfdac4bdbecf65a691226e25c
diff --git a/sci-biology/pyfaidx/metadata.xml b/sci-biology/pyfaidx/metadata.xml
deleted file mode 100644
index 47cc39d79..000000000
--- a/sci-biology/pyfaidx/metadata.xml
+++ /dev/null
@@ -1,16 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mschu.dev@gmail.com</email>
- <name>Michael Schubert</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="pypi">pyfaidx</remote-id>
- <remote-id type="github">mdshw5/pyfaidx</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
deleted file mode 100644
index bec223f6c..000000000
--- a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_SETUPTOOLS=rdepend
-
-inherit distutils-r1
-
-DESCRIPTION="Efficient pythonic random access to fasta subsequences"
-HOMEPAGE="https://pypi.python.org/pypi/pyfaidx https://github.com/mdshw5/pyfaidx"
-SRC_URI="https://github.com/mdshw5/pyfaidx/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-REPEND="dev-python/six[${PYTHON_USEDEP}]"
-
-#distutils_enable_tests nose
diff --git a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild b/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
deleted file mode 100644
index 14f557869..000000000
--- a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
+++ /dev/null
@@ -1,24 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_PEP517=setuptools
-
-inherit distutils-r1 pypi
-
-DESCRIPTION="Efficient pythonic random access to fasta subsequences"
-HOMEPAGE="https://pypi.python.org/pypi/pyfaidx https://github.com/mdshw5/pyfaidx"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-# Test issues reported upstream:
-# https://github.com/mdshw5/pyfaidx/issues/208
-RESTRICT="test"
-
-REPEND="dev-python/six[${PYTHON_USEDEP}]"
-
-distutils_enable_tests pytest