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| author |   Justin Lecher <jlec@gentoo.org> | 2013-01-27 18:09:52 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-01-27 18:09:52 +0000 |
| commit | 439c205f6077f2c0b37abca230044a4c46345818 (patch) | |
| tree | f3f161f5469f262feebf7672ed65c4a02af8a57c /sci-biology/samtools | |
| parent | Move traceroute6 to the traceroute package. Move arping/clockdiff to bin. U... (diff) | |
| download | historical-439c205f6077f2c0b37abca230044a4c46345818.tar.gz historical-439c205f6077f2c0b37abca230044a4c46345818.tar.bz2 historical-439c205f6077f2c0b37abca230044a4c46345818.zip | |
sci-biology/samtools: Add missing deps and correct sed lines, #454134; thanks Torsten Veller
Package-Manager: portage-2.2.0_alpha161/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'sci-biology/samtools')
| -rw-r--r-- | sci-biology/samtools/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/samtools/Manifest | 10 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-0.1.18-r2.ebuild (renamed from sci-biology/samtools/samtools-0.1.18-r1.ebuild) | 12 |
3 files changed, 20 insertions, 10 deletions
diff --git a/sci-biology/samtools/ChangeLog b/sci-biology/samtools/ChangeLog index 3b5f84fde598..25b7a0286b47 100644 --- a/sci-biology/samtools/ChangeLog +++ b/sci-biology/samtools/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/samtools # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.9 2013/01/23 10:51:13 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.10 2013/01/27 18:09:51 jlec Exp $ + +*samtools-0.1.18-r2 (27 Jan 2013) + + 27 Jan 2013; Justin Lecher <jlec@gentoo.org> -samtools-0.1.18-r1.ebuild, + +samtools-0.1.18-r2.ebuild: + Add missing deps and correct sed lines, #454134; thanks Torsten Veller *samtools-0.1.18-r1 (23 Jan 2013) diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index 5ecbfdf94918..eb2b2a982ea3 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -4,14 +4,14 @@ Hash: SHA512 DIST samtools-0.1.12a.tar.bz2 355633 SHA256 377ed5cd2a4bb2b1ad572ca6fcafdd8ed644b67f01ab00fa020618fac11e59ac DIST samtools-0.1.18.tar.bz2 379306 SHA256 f3faaf34430d4782956562eb72906289e8e34d44d0c4d73837bdbeead7746b16 SHA512 fab570e0604f68046bb71a151b816315aeeeafbc970070f9b131975fe8fcf6ca0b5e02693bbde047bbe4d1500f6ff244d3d952219f69d5798af77ce9a3b643e3 WHIRLPOOL 6a430161ef382a501130436735495d3e97200b1018b3a77f5d367248d64179f2da7e84863a6699bdcff9d422d5c14a3f3f12d26a34a6a9e70d9ce4a358cb3f49 EBUILD samtools-0.1.12.ebuild 803 SHA256 352173d51993cbe61f3058330ed3accf0c2b9e79f0bc70e87f95c3824efca84c SHA512 23407c898e2566eb8f12410fd2003596424715071c5d22569fa80d7ea7151de3c7ef4d792c075efb58f33fb398796118c8aa2763f2629a94afd2d349ac344840 WHIRLPOOL 59379955b9d2161c9453ceaaadb7649c05a30a1e46f16c30157a18e98f71337edee264cc6b941a80d7bd21f784f8769da2271e19fede0f313f523e098501927b -EBUILD samtools-0.1.18-r1.ebuild 1307 SHA256 ca67ea1b27719e63c25fd5b2c19bcfecacbdf4f44c0548844a8885535eaeab62 SHA512 f861515f54284fffc673b164b1e77d7f5a8751417c3347fc9625fd9352034cf3c287eb84b0e2d8d144d977c05ed7c1962d2eb3e9ec0662206de7b84a6349c89f WHIRLPOOL 23317b611776830ea5ddb94df3cfa410f50aa59348b76bc3e0776965c1443830e57ca252b96cc261d5b78464f7e1ab84789900c72c355d31d745d0624ae362fa +EBUILD samtools-0.1.18-r2.ebuild 1382 SHA256 db689819d4a35b1722f403f9993fb42cd194eefa43dc203cd6a998fea0ec718e SHA512 6f360834da77872adc5ea2f951f508277031b871ce2f902b3b9172fcd54ed74f38c00e0f104c135b77495a973797ca5230c60adb8adb3d676f0cf78a5499bbf9 WHIRLPOOL 888ffdbf94719a63aaf63e020749a6b00b224b4817cb5fbc4cc190c3fe9123fdb07b900295f2cdef0948b75abd862f56f5bcf6ed7860a7fb2e5a5f600fe537e9 EBUILD samtools-0.1.18.ebuild 1257 SHA256 6d5f5ccb99180e5b9291d10f135be7b56a5361742e96af572f9cee9fe6ce2256 SHA512 a631a89a12771ee033ecd43a4e75f3b147078977685afb3a3a8a6fcd6685e8420709c62bc46273a364407c4c414409145a5b50d4acd74600a97e7ae5bb4708ac WHIRLPOOL 61a9d56717a525a742ba7bde36fd54678fdfc34709fb5e93ec7864913db7ec3c0be824f884694e8817f9a22ae1ec8cde1f6dd6ebbb29a3280600e481d343f4b5 -MISC ChangeLog 1919 SHA256 e8113852dc0e1dab919b2abba8042baf065a3539dd29cb0ee1770dbe87e64a06 SHA512 0459c99255d2aaf6f6840313fc4dcef5ee051d2afe6e751beddfb4373625de03fc4e1043f74eee2e08b96e6a7db9294ce902ec3f4f47ae63d8e2b4a4e3a7bd7c WHIRLPOOL 39007ffa8a93b3801559fad3a6cc94db65677f275ffcfae8c2e82a51261bf04f9f79dff4d2d0dc0b7ad61eff2cb3c0c9bb038ddb6d789692b0eef320c0c8b11b +MISC ChangeLog 2134 SHA256 7bc6fa985205bc7e577033f48d75ab0dcc4f3486570058e75ffe7478c61a5295 SHA512 77ead5432a001e88e8602f54cd3da815af7e154310b7cf78867b965da223c2e8838edbe6f4a27ff55d22d76111ffc4b0fcbeeb0eae8618c3860c39a52f0fd0c8 WHIRLPOOL 80e00118527f80584cf9eae7b9bfcbc1957f41c7e42abea52fd91f0ce5313546bbf20af546b76cd7a0c402ce251287ca13cc6a4b7257bebdb833d158b711e22c MISC metadata.xml 266 SHA256 98c7d1da8a728a1f1d796a79d51f25e4164e24048ec1aacbbf0ae2ffb171ff35 SHA512 879cdcca092d4c82b8c63672c91e08e7b01e81419d2c7c7b766de96ba2a32dd1e21c18968ed7172eec8604f52c92b19a31773f428bce9461d9b8190384680194 WHIRLPOOL 0f46288ab7090ad3da5b31816792427e4ad1a950e39a503bb406ebe8789cffedd9c85b46bfbf040fffb8aad443f512c28716a0a6436d0c06309155277060cdcd -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.19 (GNU/Linux) -iEYEAREKAAYFAlD/wKIACgkQgAnW8HDreRa1hACgknssEN2ZLKaK2KnxjMvOvDbC -SycAnRzh4a6xBM1CdW8tAvgdbIl5hMFx -=iLJI +iEYEAREKAAYFAlEFbXcACgkQgAnW8HDreRY6BgCcDZHQL/xSSbDwn+lrxa3M3Zzi +wAkAoKxSylku6frlMqizl1urseR4ir3+ +=tphi -----END PGP SIGNATURE----- diff --git a/sci-biology/samtools/samtools-0.1.18-r1.ebuild b/sci-biology/samtools/samtools-0.1.18-r2.ebuild index 30ae8d10d078..8611ab2e5597 100644 --- a/sci-biology/samtools/samtools-0.1.18-r1.ebuild +++ b/sci-biology/samtools/samtools-0.1.18-r2.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-0.1.18-r1.ebuild,v 1.1 2013/01/23 10:51:13 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-0.1.18-r2.ebuild,v 1.1 2013/01/27 18:09:51 jlec Exp $ EAPI=5 @@ -15,11 +15,15 @@ SLOT="0" IUSE="examples" KEYWORDS="~amd64 ~x86 ~x64-macos" +RDEPEND="sys-libs/ncurses" +DEPEND="${RDEPEND} + virtual/pkgconfig" + src_prepare() { sed \ - -e '/CC/s:=:?=:g' \ - -e "/LIBCURSES/s:=.*$:= $(pkg-config --libs ncurses):g" \ - -e '/^CFLAGS=/d' \ + -e '/^CC/s:=:?=:g' \ + -e "/^LIBCURSES/s:=.*$:= $(pkg-config --libs ncurses):g" \ + -e '/^CFLAGS=/s:=:?=:' \ -e "s/\$(CC) \$(CFLAGS)/& \$(LDFLAGS)/g" \ -e "s/-shared/& \$(LDFLAGS)/" \ -i "${S}"/{Makefile,misc/Makefile} || die #358563 |