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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-02-18 05:05:41 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-02-18 05:05:41 +0000 |
| commit | a39fe15801af970ed455e1142b5013813e626673 (patch) | |
| tree | 4ec84061b167a9949fd0e458f4b8e98a86311177 /sci-biology/samtools | |
| parent | Add make.defaults to n32 profiles to set LIBDIR to the correct location. (diff) | |
| download | historical-a39fe15801af970ed455e1142b5013813e626673.tar.gz historical-a39fe15801af970ed455e1142b5013813e626673.tar.bz2 historical-a39fe15801af970ed455e1142b5013813e626673.zip | |
Address bug 354941, build library, correct versioning
Package-Manager: portage-2.2_rc86/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/samtools')
| -rw-r--r-- | sci-biology/samtools/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/samtools/Manifest | 13 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-0.1.12a.ebuild | 39 |
3 files changed, 47 insertions, 12 deletions
diff --git a/sci-biology/samtools/ChangeLog b/sci-biology/samtools/ChangeLog index f259132426fd..614bee7692bd 100644 --- a/sci-biology/samtools/ChangeLog +++ b/sci-biology/samtools/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/samtools # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.3 2011/02/17 09:05:13 tomka Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.4 2011/02/18 05:05:41 weaver Exp $ + +*samtools-0.1.12a (18 Feb 2011) + + 18 Feb 2011; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.12a.ebuild: + Address bug 354941, build library, correct versioning 17 Feb 2011; Thomas Kahle <tomka@gentoo.org> samtools-0.1.12.ebuild: x86 stable per bug 353566 diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index c11593fc337a..130aee84c266 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,14 +1,5 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - DIST samtools-0.1.12a.tar.bz2 355633 RMD160 e2732e61b216bc2d8e6a1c81aa91c34f296cef29 SHA1 d517cd189aa714251a0e43cb83dea3ae0f29bffa SHA256 377ed5cd2a4bb2b1ad572ca6fcafdd8ed644b67f01ab00fa020618fac11e59ac EBUILD samtools-0.1.12.ebuild 825 RMD160 945e352ee7f8a2c0726056fa12df4b0d1d0606c8 SHA1 b7d91116e37c1c990e3bbb816b0aad4239f02dff SHA256 b99a0a6d5b03c44f70324eaf5fa7dabad68ddef8707d6e384585d2cc9bab5a45 -MISC ChangeLog 746 RMD160 5c64ac9db8e0a8734bd8dbf45539277d6956f99c SHA1 e27294f7b1afa7708ab03c27acafc7374d894649 SHA256 d6b519b7e6ca72a66d653c3ab18875a4f17ecac732a9347af5b414325a66ea40 +EBUILD samtools-0.1.12a.ebuild 1070 RMD160 04ef59de06e29cde782694c2e2c2b95af0e1b2f9 SHA1 a88cf2a4d3ee20b535fcc4df5e8d82f2834c4310 SHA256 323c9bbfa06be576b8c3b4d227617f1b8021ef507bb9ecfb95667a83a5977d16 +MISC ChangeLog 913 RMD160 a891e197757793cac041a0f0c18e12af4dfc0adb SHA1 9e5075bedd5f9cfbd957edbf99f5476c6aa0361a SHA256 ddbcc3b9b71757ce3233256cb46fa2c3f5060bda307f0999102901fe89dedb3d MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.17 (GNU/Linux) - -iEYEARECAAYFAk1c5OwACgkQnZsgo/h8kNaUFgCgnRbBsZEaeawxEA/oiHUV5P/l -Y6oAn0jJDloUkvo3seqc/rT7aTWM24Y7 -=2moY ------END PGP SIGNATURE----- diff --git a/sci-biology/samtools/samtools-0.1.12a.ebuild b/sci-biology/samtools/samtools-0.1.12a.ebuild new file mode 100644 index 000000000000..48b79b7e30aa --- /dev/null +++ b/sci-biology/samtools/samtools-0.1.12a.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-0.1.12a.ebuild,v 1.1 2011/02/18 05:05:41 weaver Exp $ + +EAPI="2" + +DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments" +HOMEPAGE="http://${PN}.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="" + +src_prepare() { + sed -i 's/^CFLAGS=/CFLAGS+=/' "${S}"/{Makefile,misc/Makefile} || die + sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die +} + +src_compile() { + emake dylib || die + emake || die +} + +src_install() { + dobin samtools || die + dobin $(find misc -type f -executable) || die + dolib.so libbam.so.1 || die + insinto /usr/include/bam + doins bam.h bgzf.h faidx.h kaln.h khash.h kprobaln.h kseq.h ksort.h sam.h|| die + insinto /usr/share/${PN} + doins -r examples || die + doman ${PN}.1 || die + dodoc AUTHORS ChangeLog NEWS +} |