3 files changed, 47 insertions, 12 deletions
diff --git a/sci-biology/samtools/ChangeLog b/sci-biology/samtools/ChangeLog
index f259132426fd..614bee7692bd 100644
--- a/sci-biology/samtools/ChangeLog
+++ b/sci-biology/samtools/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/samtools
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.3 2011/02/17 09:05:13 tomka Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.4 2011/02/18 05:05:41 weaver Exp $
+
+*samtools-0.1.12a (18 Feb 2011)
+
+  18 Feb 2011; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.12a.ebuild:
+  Address bug 354941, build library, correct versioning
 
   17 Feb 2011; Thomas Kahle <tomka@gentoo.org> samtools-0.1.12.ebuild:
   x86 stable per bug 353566
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest
index c11593fc337a..130aee84c266 100644
--- a/sci-biology/samtools/Manifest
+++ b/sci-biology/samtools/Manifest
@@ -1,14 +1,5 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST samtools-0.1.12a.tar.bz2 355633 RMD160 e2732e61b216bc2d8e6a1c81aa91c34f296cef29 SHA1 d517cd189aa714251a0e43cb83dea3ae0f29bffa SHA256 377ed5cd2a4bb2b1ad572ca6fcafdd8ed644b67f01ab00fa020618fac11e59ac
 EBUILD samtools-0.1.12.ebuild 825 RMD160 945e352ee7f8a2c0726056fa12df4b0d1d0606c8 SHA1 b7d91116e37c1c990e3bbb816b0aad4239f02dff SHA256 b99a0a6d5b03c44f70324eaf5fa7dabad68ddef8707d6e384585d2cc9bab5a45
-MISC ChangeLog 746 RMD160 5c64ac9db8e0a8734bd8dbf45539277d6956f99c SHA1 e27294f7b1afa7708ab03c27acafc7374d894649 SHA256 d6b519b7e6ca72a66d653c3ab18875a4f17ecac732a9347af5b414325a66ea40
+EBUILD samtools-0.1.12a.ebuild 1070 RMD160 04ef59de06e29cde782694c2e2c2b95af0e1b2f9 SHA1 a88cf2a4d3ee20b535fcc4df5e8d82f2834c4310 SHA256 323c9bbfa06be576b8c3b4d227617f1b8021ef507bb9ecfb95667a83a5977d16
+MISC ChangeLog 913 RMD160 a891e197757793cac041a0f0c18e12af4dfc0adb SHA1 9e5075bedd5f9cfbd957edbf99f5476c6aa0361a SHA256 ddbcc3b9b71757ce3233256cb46fa2c3f5060bda307f0999102901fe89dedb3d
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
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-Y6oAn0jJDloUkvo3seqc/rT7aTWM24Y7
-=2moY
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diff --git a/sci-biology/samtools/samtools-0.1.12a.ebuild b/sci-biology/samtools/samtools-0.1.12a.ebuild
new file mode 100644
index 000000000000..48b79b7e30aa
--- /dev/null
+++ b/sci-biology/samtools/samtools-0.1.12a.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-0.1.12a.ebuild,v 1.1 2011/02/18 05:05:41 weaver Exp $
+
+EAPI="2"
+
+DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments"
+HOMEPAGE="http://${PN}.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND=""
+
+src_prepare() {
+	sed -i 's/^CFLAGS=/CFLAGS+=/' "${S}"/{Makefile,misc/Makefile} || die
+	sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die
+}
+
+src_compile() {
+	emake dylib || die
+	emake || die
+}
+
+src_install() {
+	dobin samtools || die
+	dobin $(find misc -type f -executable) || die
+	dolib.so libbam.so.1 || die
+	insinto /usr/include/bam
+	doins bam.h bgzf.h faidx.h kaln.h khash.h kprobaln.h kseq.h ksort.h sam.h|| die
+	insinto /usr/share/${PN}
+	doins -r examples || die
+	doman ${PN}.1 || die
+	dodoc AUTHORS ChangeLog NEWS
+}