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| author |   Justin Lecher <jlec@gentoo.org> | 2013-07-17 07:32:04 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-07-17 07:32:04 +0000 |
| commit | 124ee8a855f50252e234b33b0cb51e29cd473b79 (patch) | |
| tree | 09ba8a3fd1335c4b6bfa39f579554aeeefe48d63 /sci-biology | |
| parent | Version bump. jQuery 1.10.0. jQuery UI 1.10.3. (diff) | |
| download | gentoo-2-124ee8a855f50252e234b33b0cb51e29cd473b79.tar.gz gentoo-2-124ee8a855f50252e234b33b0cb51e29cd473b79.tar.bz2 gentoo-2-124ee8a855f50252e234b33b0cb51e29cd473b79.zip | |
sci-biology/abyss: Moved to autotools-utils.eclass
(Portage version: 2.2.0_alpha188/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/abyss/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/abyss/abyss-1.3.4.ebuild | 21 |
2 files changed, 17 insertions, 9 deletions
diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog index 6f918fa498eb..89db16567a20 100644 --- a/sci-biology/abyss/ChangeLog +++ b/sci-biology/abyss/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/abyss # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.14 2013/03/11 14:35:27 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.15 2013/07/17 07:32:04 jlec Exp $ + + 17 Jul 2013; Justin Lecher <jlec@gentoo.org> abyss-1.3.4.ebuild: + Moved to autotools-utils.eclass 11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml: Drop Andrey as maintainer so that bugs get assigned to sci-biology directly diff --git a/sci-biology/abyss/abyss-1.3.4.ebuild b/sci-biology/abyss/abyss-1.3.4.ebuild index 6ce67798ca99..3e8e7fa36f4e 100644 --- a/sci-biology/abyss/abyss-1.3.4.ebuild +++ b/sci-biology/abyss/abyss-1.3.4.ebuild @@ -1,10 +1,12 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.4.ebuild,v 1.1 2012/06/20 20:48:56 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.4.ebuild,v 1.2 2013/07/17 07:32:04 jlec Exp $ -EAPI="4" +EAPI=5 -inherit autotools eutils +AUTOTOOLS_AUTORECONF=true + +inherit autotools-utils DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" @@ -23,15 +25,18 @@ RDEPEND="${DEPEND}" # todo: --enable-maxk=N configure option # todo: fix automagic mpi toggling +PATCHES=( "${FILESDIR}"/${P}-gcc-4.7.patch ) + src_prepare() { - epatch "${FILESDIR}"/${P}-gcc-4.7.patch sed -i -e "s/-Werror//" configure.ac || die #365195 sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die - eautoreconf + autotools-utils_src_prepare } src_configure() { - econf \ - --docdir="${EPREFIX}/usr/share/doc/${PF}" \ + local myeconfargs=( + --docdir="${EPREFIX}/usr/share/doc/${PF}" $(use_enable openmp) + ) + autotools-utils_src_configure } |